LFSPRO-package | TP53 mutation carrier estimation |
calLK | Calculate the likelihood Pr(D|G). |
cancer.data | Cancer information data |
cancer.type.all | Predefined cancer types in LFSPRO. |
CombineData | Combine the family information data and cancer information data |
fam.cancer.data | Combined data with family and cancer information |
fam.data | Family information data |
firstDegreeRelative | First degree relatives |
invasive.cut | Cutoff for malignant cancer |
lfs.cut | Cutoff for Li-Fraumeni Syndrome spectrum cancer |
LFSChompret | The Chompret criteria for Li-Fraumeni syndrome |
LFSChompret2015 | The Chompret criteria for Li-Fraumeni syndrome |
LFSClassic | The Classic criteria for Li-Fraumeni syndrome |
LFSpenet.2010 | Penetrance for TP53 mutation |
lfspro | Estimating TP53 mutation probability for families with Li-Fraumeni Syndrome |
LFSpro.cancer.type | Predefined cancer types and the corresponding number in LFSpro |
lfsproC | Estimating TP53 mutation probability for families with Li-Fraumeni Syndrome for combined family and cancer data |
lkNoneAffect | Likelihood for non-affected individuals |
peelingRC | Peeling interface in R. |
reformatForClassicChompret | Reformat input data of LFSpro for evaluation using the Classic or the Chompret criteria |
secondDegreeRelative | Second degree relative |