The slide-comparison2 module provides the
definition of the
slide.conparison2
class.
See the bottom of the page for an example of how the class can be used.
x
and y
components,
representing smooth t-scores.replicate.ratio
class) derived from two.groups
. The optional
filt
argument allows you to remove certain genes from
the comparison of rankings. The constructor computes the rank
coherence between the two analysis objects, and alos simulates
random agreement for compariosn purposes. (This is probabnly no
longer a smart thing to do.)tag
argument is
prepended to the names of the analysis objects for use in the title
of the latter graph. The cll
argument seems to no
longer be used for anything; maybe this will change in the
future. The optional hlines
and vlines
arguments are passed to abline
to add horizontal or
vertical lines to the graph, respectively.cs1
and cs2
should be
complete.slide
objects. The return
value is a two.groups
object.An object of the slide.comparison2
class encapsulates the reuslts of a rank coherence analysis comparing
two experiments that are both ranking the same sets of genes with
smooth t-statistics.