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Aliases & Descriptionsfor CLDN10 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions claudin 101 2 CPETRL31 2 OSP-L1 2 OSP-like protein2 3 claudin-102
Export aliases for CLDN10 gene to outside databases Previous GC identifers: GC13P094445 GC13P090473 GC13P094922 GC13P093783 GC13P094883 GC13P096085
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Summariesfor CLDN10 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CLDN10 : This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in maintaining cell polarity and signal transductions. The expression level of this gene is associated with recurrence of primary hepatocellular carcinoma. Six alternatively spliced transcript variants encoding different isoforms have been reported, but the transcript sequences of some variants are not determined. UniProtKB/Swiss-Prot: CLD10_HUMAN, P78369 Function : Plays a major role in tight junction-specific obliteration of the intercellular space, throughcalcium-independent cell-adhesion activity (By similarity) Gene Wiki entry for CLDN10
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Genomic Viewsfor CLDN10 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CLDN10 gene promoter: Chx10 NF-E2 NF-E2 p45 FOXF2 C/EBPbeta SRF TGIF RP58 GATA-1 POU2F1 Other transcription factors Search SABiosciences Chromatin IP Primers for CLDN10 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for CLDN10
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 13q31-q34 Ensembl cytogenetic band: 13q32.1 HGNC cytogenetic band: 13q31-q34 CLDN10 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 13 GeneLoc Exon Structure
GeneLoc location for GC13P076683: view genomic region
(about GC identifiers )
Start:
76,683,603 bp from pter
End:
76,829,764 bp from pter
Size:
146,162 bases
Orientation:
plus strand
1 alternative location : Chr 13+ 96,085,858-96,231,906
RefSeq DNA sequence: NC_000013.10 NT_009952.14
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Proteinsfor CLDN10 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: CLD10_HUMAN, P78369 (See
protein sequence )Recommended Name: Claudin-10 Size : 228 amino acids; 24488 Da
Subcellular location : Cell junction, tight junction. Cell membrane; Multi-pass membrane proteinExplore the universe of human proteins at neXtProt for CLDN10: NX_P78369 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001153572.1 NP_008915.1 NP_878268.1 ENSEMBL proteins: ENSP00000366051 ENSP00000299339 ENSP00000366069 Human Recombinant Proteins 5 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
CLDN10 for ontologies About GeneDecksing Antibodies for CLDN10: Assays for CLDN10:
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Protein
Domains/ Familiesfor CLDN10 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CLDN10 for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P78369 ProtoNet protein and cluster: P78369
2 Blocks protein families : IPB003554 Claudin-10 signature IPB006187 Claudin family signature UniProtKB/Swiss-Prot: CLD10_HUMAN, P78369 Similarity : Belongs to the claudin family
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Gene Functionfor CLDN10 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: CLD10_HUMAN, P78369 Function : Plays a major role in tight junction-specific obliteration of the intercellular space, throughcalcium-independent cell-adhesion activity (By similarity)
Genatlas biochemistry entry for CLDN10 :claudin 10,clostridium perfringens enterotoxin receptor,integral membrane protein,claudin family of major structural components of tight junction (TJ) strands,widely expressed 2 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005198 structural molecule activity
IEA -- GO:0042802 identical protein binding
ISS --
About this table
CLDN10 for ontologies About GeneDecksing
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Pathways & Interactionsfor CLDN10 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
CLDN10 for pathways About GeneDecksing 2 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathways for CLDN10 4 Kegg Pathways (Kegg details for CLDN10) : SABiosciences Custom Pathway-Focused PCR Arrays for CLDN10 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for CLDN10 SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CLDN10 5/105 Interacting proteins for CLDN10 (ENSP00000299339 3 ) via UniProtKB, MINT, and/or STRING (see all 105 )About this table 2 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
About this table
CLDN10 for ontologies About GeneDecksing
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Drugs & Compoundsfor CLDN10 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for CLDN10
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Transcriptsfor CLDN10 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for CLDN10 gene (3 alternative transcripts): NM_001160100.1 NM_006984.4 NM_182848.3
Additional cDNA sequence: AF339794.1 AK055855.1 AK315737.1 BC010920.1 CR456845.1 U89916.1
7 DOTS entries : DT.212544 DT.75199458 DT.92421647 DT.40118535 DT.92421648 DT.311780 DT.95070448
24/91 AceView cDNA sequences (see all 91 ):
AK055855 NM_006984 AI089846 BU686852 CB119421 AW160992 CA450135 AA341006 AA394111 AF339794 AI861881 AW960040 CA335155 BC010920 NM_182848 BG429316 AI522187 AL699037 CA776387 BI523494 BM955857 U89916 AW452851 CF529753
highest scoring ESTs for CLDN10 :U89916 AA142937 AA292311 AA366287 AA394111 AA480851 AA902570 AF339794 AI089846 AI095035 Unigene Cluster for CLDN10:
Claudin 10 Hs.534377 [show with all ESTs ] Unigene Representative Sequence: NM_182848 GeneLoc Exon Structure 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000376855 ENST00000299339 ENST00000376873 (uc001vmg.2 uc010tii.1 uc001vmh.2 )
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Expression for CLDN10 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section CLDN10 expression in normal and diseased human tissues 1 / 2 / 3
5 probe-sets matching CLDN10 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
39579_at2 , 3
U95-A
1
1.00
1.00
1.00
1.00
U89916
1.00
1.00
1.00
1
42072_at2 , 3
U95-B
1
0.31
1.00
0.57
0.39
AI861881
0.60
1.00
0.82
1
205328_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_006984
0.60
1.00
0.82
1
205328_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
1556687_a_at2
U133Plus2
1
0.27
1.00
--
--
--
--
--
--
--
About this table
CLDN10 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTGGAGAAGA SOURCE GeneReport for Unigene cluster: Hs.534377 Expression variation in blood from EXPOLDB for CLDN10
SABiosciences Custom PCR Arrays for CLDN10
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Orthologsfor CLDN10 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for CLDN10 gene from 5/8 species (see all 8 )
About this table Species with no ortholog for CLDN10 ENSEMBL Gene Tree for CLDN10 (if available)
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Paralogsfor CLDN10 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for CLDN10 gene CLDN20 2 CLDN24 2 CLDN18 2 CLDN2 2 CLDN25 2 CLDN15 2 CLDN14 2 CLDN22 2
CLDN10 for paralogs About GeneDecksing
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Genomic Variantsfor CLDN10 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 13 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for CLDN10 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for CLDN10: --
QIAGEN SeqTarget long-range PCR primers for resequencing CLDN10
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Disorders & Mutationsfor CLDN10 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CLDN10 for disorders About GeneDecksing 1 Novoseek disease relationship for CLDN10 gene
About this table Human Genome Epidemiology (HuGE) Navigator: CLDN10 (2 documents) Export disorders and mutations for CLDN10 gene to outside databases
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Medical Newsfor CLDN10 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor CLDN10 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/33 PubMed articles for CLDN10 gene, integrated from 7 sources (see all 33 ): (articles sorted by number of sources associating them with CLDN10) Inhibition of hepatocellular carcinoma invasion by suppression of claudin-10 in HLE cells. (PubMed id 18025272) 1 , 3, 7 Ip Y.C....Fan S.T. (2007) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Claudin-10 expression level is associated with recurrence of primary hepatocellular carcinoma. (PubMed id 15701840) 1 , 7 Cheung S.T....So S. (2005) Claudin-10 exists in six alternatively spliced isoforms that exhibit distinct localization and function. (PubMed id 19383724) 1 , 7 GA1nzel D....MA1ller D. (2009) Claudins in human cancer: a review. (PubMed id 19924644) 1 Ouban A. and Ahmed A.A. (2010) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) The claudins. (PubMed id 19706201) 1 Lal-Nag M. and Morin P.J. (2009) Automated phosphoproteome analysis for cultured cancer cells by two- dimensional nanoLC-MS using a calcined titania/C18 biphasic column. (PubMed id 18187866) 2 Imami K.... Ishihama Y. (2008) Structure and function of claudins. (PubMed id 18036336) 1 Krause G....Blasig I.E. (2008) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006)
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External Searches for CLDN10 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CLDN10 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CLDN10 gene
(According to HUGE )
About This Section --
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Specialized Databases showing CLDN10 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for CLDN10 gene: Search GeneIP for patents involving CLDN10 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CLDN10 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for CLDN10
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