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Aliases & Descriptionsfor IGFBP7 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions insulin-like growth factor binding protein 71 2 IBP-72 3 MAC251 2 3 5 TAF2 3 IGFBP-71 2 3 PGI2-stimulating factor2 3 PSF1 2 3 insulin-like growth factor-binding protein 72 FSTL21 2 IGFBPRP12 Prostacyclin-stimulating factor2 3 IGFBP-7v2 Tumor-derived adhesion factor2 3 angiomodulin2 IGFBP-rP12 3 AGM2 IGF-binding protein 72 3 MAC25 protein3
Export aliases for IGFBP7 gene to outside databases Previous GC identifers: GC04M057701 GC04M057893 GC04M057812 GC04M057738 GC04M057592
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Summariesfor IGFBP7 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: IBP7_HUMAN, Q16270 Function : Binds IGF-I and IGF-II with a relatively low affinity. Stimulates prostacyclin (PGI2) production. Stimulatescell adhesion Gene Wiki entry for IGFBP7
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Genomic Viewsfor IGFBP7 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the IGFBP7 gene promoter: IRF-7A AP-2alphaA AP-2gamma Sox9 IRF-1 ATF Nkx6-1 FOXJ2 (long isoform) Lmo2 CUTL1 Other transcription factors Search SABiosciences Chromatin IP Primers for IGFBP7 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for IGFBP7
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 4q12 Ensembl cytogenetic band: 4q12 HGNC cytogenetic band: 4q12 IGFBP7 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure
GeneLoc location for GC04M053850: view genomic region
(about GC identifiers )
Start:
53,850,818 bp from pter
End:
53,930,079 bp from pter
Size:
79,262 bases
Orientation:
minus strand
1 alternative location : Chr 4- 57,896,939-57,976,551
RefSeq DNA sequence: NC_000004.11 NT_022853.15
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Proteinsfor IGFBP7 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: IBP7_HUMAN, Q16270 (See
protein sequence )Recommended Name: Insulin-like growth factor-binding protein 7 precursor Size : 282 amino acids; 29130 Da
Subunit : May interact with VPS24/CHMP3; the relevance of such interaction however remains unclear
Subcellular location : Secreted
Rna editing : Modified_positions=78, 95; Note=Partially edited. In the brain, position 78 is edited at about 55% andposition 95 at about 31%
Secondary accessions : Q07822 Q53YE6 Q9UCA8Explore the universe of human proteins at neXtProt for IGFBP7: NX_Q16270 Post-translational modifications:
N-glycosylated1
REFSEQ proteins: NP_001544.1 ENSEMBL proteins: ENSP00000295666 Human Recombinant Proteins 3 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
IEA -- GO:0005615 extracellular space
IDA -- GO:0031012 colocalizes with extracellular matrix
IDA --
About this table
IGFBP7 for ontologies About GeneDecksing Antibodies for IGFBP7: Assays for IGFBP7:
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Protein
Domains/ Familiesfor IGFBP7 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
IGFBP7 for domains About GeneDecksing 5/8 InterPro domains/families (see all 8 ):
Graphical View of Domain Structure for InterPro Entry Q16270 ProtoNet protein and cluster: Q16270
3 Blocks protein families : IPB003599 Immunoglobulin subtype IPB011497 Protease inhibitor IPB013098 Immunoglobulin I-set UniProtKB/Swiss-Prot: IBP7_HUMAN, Q16270 Similarity : Contains 1 Ig-like C2-type (immunoglobulin-like) domainSimilarity : Contains 1 IGFBP N-terminal domainSimilarity : Contains 1 Kazal-like domain
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Gene Functionfor IGFBP7 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: IBP7_HUMAN, Q16270 Function : Binds IGF-I and IGF-II with a relatively low affinity. Stimulates prostacyclin (PGI2) production. Stimulatescell adhesion
Genatlas biochemistry entry for IGFBP7 :insuline-like growth factor binding protein 7 (related protein 1),expressed in both in situ and invasive neoplasm and increased in senescent cells 2 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
IGFBP7 for ontologies About GeneDecksing Animal Models: 1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Igfbp7) :
IGFBP7 for phenotypes About GeneDecksing
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Pathways & Interactionsfor IGFBP7 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
IGFBP7 for pathways About GeneDecksing 2 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathways for IGFBP7 SABiosciences Pathway-Focused PCR Array including IGFBP7 : PAHS-050A Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for IGFBP7 SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for IGFBP7 5/10 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 10 ):
About this table
IGFBP7 for ontologies About GeneDecksing
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Drugs & Compoundsfor IGFBP7 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
IGFBP7 for compounds About GeneDecksing Browse Tocris compounds for IGFBP7 9 Novoseek chemical compound relationships for IGFBP7 gene
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
5-aza-2'deoxycytidine
66.9
3
19094461 (1), 17236181 (1), 19638426 (1)
prostacyclin
63.4
25
8435236 (3), 7980422 (3), 1837513 (3), 8982858 (2) (see all 12 )
agar
35
2
10344746 (1), 17465992 (1)
txb2
20.9
1
1837513 (1)
retinoic acid
19
9
7538673 (2), 11295114 (1), 11089538 (1)
vegf
4.13
2
19374835 (2)
serine
4.03
1
16420484 (1)
glucose
0
10
15027891 (3), 9313760 (3), 16873698 (1)
estrogen
0
5
17545519 (1), 11429696 (1)
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Transcriptsfor IGFBP7 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for IGFBP7 gene: NM_001553.1
Additional cDNA sequence: AF540057.1 AK303915.1 AK316082.1 BC017201.2 BC066339.1 BT006654.1 BX648756.1 CR599263.1 CR607474.1 CR612946.1 CR615138.1 CR619194.1 CR619713.1 CR626227.1 L19182.1 S75725.1
24/26 DOTS entries (see all 26 ): DT.95170564 DT.97760173 DT.40205446 DT.92040454 DT.100045783 DT.95170547 DT.95170563 DT.91955903
DT.92413462 DT.100674865 DT.100674866 DT.95170568 DT.100674872 DT.121219229 DT.121219282 DT.121219324 DT.121219400 DT.95104371 DT.95313534 DT.97812821 DT.118707 DT.121219304 DT.451262 DT.91980279 24/688 AceView cDNA sequences (see all 688 ):
BU948156 CD679099 CA952677 BF056097 AA557124 AA730101 AW517171 BM314525 CA942661 AW074676 CA447588 BU730944 BQ773909 BF725225 CD517905 AA653623 AI923605 AW572072 AA151485 BM673354 BM091458 AW192242 AI138712 AI755056
highest scoring ESTs for IGFBP7 :L19182 AA341077 BF967200 BG495848 BI909939 BM509054 BM689029 BQ948560 CN481182 CN481391 Unigene Cluster for IGFBP7:
Insulin-like growth factor binding protein 7 Hs.479808 [show with all ESTs ] Unigene Representative Sequence: BX648756 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for IGFBP7 ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b SP1 :               -   -       SP2 :       -   -       -   -       SP3 :                       SP4 :       -                
About this scheme ECgene alternative splicing isoforms for IGFBP7 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000295666 (uc003hcn.2 uc011cag.1 )
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Expression for IGFBP7 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section IGFBP7 expression in normal and diseased human tissues 1 / 2 / 3
5 probe-sets matching IGFBP7 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
2062_at2 , 3
U95-A
1
0.56
1.00
1.00
1.00
L19182
1.00
0.90
0.95
1
201162_at2 , 3
U133-A
1
0.82
1.00
--
--
NM_001553
0.60
1.00
0.82
1
201163_s_at2 , 3
U133-A
1
0.73
1.00
--
--
NM_001553
0.60
1.00
0.82
1
201162_at2
U133Plus2
1
0.82
1.00
--
--
--
--
--
--
--
201163_s_at2
U133Plus2
1
0.73
1.00
--
--
--
--
--
--
--
About this table
IGFBP7 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CATATCATTA TTTCCTTCAT SOURCE GeneReport for Unigene cluster: Hs.479808 Expression variation in blood from EXPOLDB for IGFBP7
SABiosciences Expression via Pathway-Focused PCR Array including IGFBP7 : PAHS-050A
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Orthologsfor IGFBP7 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for IGFBP7 gene from 5/7 species (see all 7 )
About this table Species with no ortholog for IGFBP7 ENSEMBL Gene Tree for IGFBP7 (if available)
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Paralogsfor IGFBP7 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for IGFBP7 gene KAZALD1 2 IGFBPL1 2
IGFBP7 for paralogs About GeneDecksing
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Genomic Variantsfor IGFBP7 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 4 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for IGFBP7 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for IGFBP7: --
QIAGEN SeqTarget long-range PCR primers for resequencing IGFBP7
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Disorders & Mutationsfor IGFBP7 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
IGFBP7 for disorders About GeneDecksing
OMIM: 602867 10/24 Novoseek disease relationships for IGFBP7 gene (see all 24 )
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
diabetic angiopathies
56.9
2
8674874 (2)
bladder carcinoma
36.7
2
17465992 (1), 14521955 (1)
tumors
32.3
45
17136345 (4), 11429696 (4), 10344746 (2), 18701096 (2) (see all 21 )
colon cancer
29.8
5
18981723 (1), 17334979 (1), 17465992 (1), 9605951 (1)
colorectal cancer
29.4
14
19094461 (6), 18701096 (3), 15027891 (2), 17136345 (1) (see all 5 )
prostate cancer
28.5
22
14633696 (6), 10344746 (3), 10383131 (3), 9851777 (1) (see all 7 )
benign prostatic hyperplasia
21.4
1
14633696 (1)
breast cancer
19.3
12
17634530 (4), 15979304 (2), 11295114 (1), 9449045 (1) (see all 7 )
cancer
16.8
13
15027891 (4), 8939990 (1), 11295114 (1), 11400113 (1) (see all 8 )
meningioma
11
2
11089538 (1), 7538673 (1)
About this table 1 PharmGKB disease relationship for IGFBP7 gene About this table Genetic Association Database (GAD): IGFBP7 Human Genome Epidemiology (HuGE) Navigator: IGFBP7 (2 documents) Export disorders and mutations for IGFBP7 gene to outside databases
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Medical Newsfor IGFBP7 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor IGFBP7 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/122 PubMed articles for IGFBP7 gene, integrated from 7 sources (see all 122 ): (articles sorted by number of sources associating them with IGFBP7) Purification and molecular cloning of prostacyclin-stimulating factor from serum-free conditioned medium of human diploid fibroblast cells. (PubMed id 7980422) 1 , 2 , 3, 7 Yamauchi T....Nawata H. (1994) Identification and characterization of genes differentially expressed in meningiomas. (PubMed id 7694637) 1 , 2 , 3 Murphy M.... George D.L. (1993) Synthesis and characterization of insulin-like growth factor-binding protein (IGFBP)-7. Recombinant human mac25 protein specifically binds IGF-I and -II. (PubMed id 8939990) 1 , 2 , 7 Oh Y....Rosenfeld R.G. (1996) Genetic association analysis of the IGFBP7, ADAMTS3, and IL8 genes as the potential osteoarthritis susceptibility that maps to chromosome 4q. (PubMed id 15708897) 1 , 4 Kawahara C....Loughlin J. (2005) Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161) 1 , 2 Zhang Z. and Henzel W.J. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Interaction of IGF-binding protein-related protein 1 with a novel protein, neuroendocrine differentiation factor, results in neuroendocrine differentiation of prostate cancer cells. (PubMed id 11549700) 1 , 2 Wilson E.M.... Rosenfeld R.G. (2001) Cell adhesion activity of a 30-kDa major secreted protein from human bladder carcinoma cells. (PubMed id 8117260) 1 , 2 Akaogi K.... Miyazaki K. (1994) Circulating IGF-binding protein 7 (IGFBP7) levels are elevated in patients with endometriosis or undergoing diabetic hemodialysis. (PubMed id 19019211) 1 , 7 Kutsukake M....Tamura K. (2008) Immunohistochemical study of prostacyclin-stimulating factor (PSF) in the diabetic and atherosclerotic human coronary artery. (PubMed id 9313760) 1 , 7 Sekiguchi N....Nawata H. (1997)
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External Searches for IGFBP7 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing IGFBP7 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing IGFBP7 gene
(According to HUGE )
About This Section --
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Specialized Databases showing IGFBP7 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for IGFBP7 gene: Search GeneIP for patents involving IGFBP7 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor IGFBP7 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for IGFBP7
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