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MAP1LC3C Gene

protein-coding   GIFtS: 41

GC01M212618
microtubule-associated protein 1 light chain 3 gamma
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases & Descriptions
microtubule-associated protein 1 light chain 3 gamma1 2 3     MAP1 light chain 3-like protein 32 3
ATG8J1 2     LC3-like protein 22
Autophagy-related protein LC3 C2 3     MAP1 light chain 3-like protein 22
Autophagy-related ubiquitin-like modifier LC3 C2 3     microtubule-associated proteins 1A/1B light chain 3C2
MAP1A/MAP1B light chain 3 C2 3     LC3C2
MAP1A/MAP1B LC3 C2 3     

External Ids:    HGNC: 133531   Entrez Gene: 4407382   Ensembl: ENSG000001977697   UniProtKB: Q9BXW43   

Export aliases for MAP1LC3C gene to outside databases

Previous GC identifers: GC01M238485 GC01M240225 GC01M242158


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for MAP1LC3C:
Autophagy is a highly regulated bulk degradation process that plays an important role in cellular maintenance and
development. MAP1LC3C is an ortholog of the yeast autophagosome protein Atg8 (He et al., 2003 (PubMed
12740394)).(supplied by OMIM)

UniProtKB/Swiss-Prot: MLP3C_HUMAN, Q9BXW4
Function: Probably involved in formation of autophagosomal vacuoles (autophagosomes) (By similarity)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the MAP1LC3C gene promoter:
         MRF-2   LCR-F1   deltaCREB   CREB   NF-E2   NF-E2 p45   p53   c-Fos   c-Jun   Fra-1   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for MAP1LC3C

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q43   Ensembl cytogenetic band:  1q43   HGNC cytogenetic band: 1q43

MAP1LC3C Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MAP1LC3C gene location

GeneLoc gene densities for chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M212618:  view genomic region     (about GC identifiers)

Start:
212,617,683 bp from pter
End:
212,621,283 bp from pter
Size:
3,601 bases
Orientation:
minus strand

1 alternative location:
Chr1- 242,158,792-242,162,375     
RefSeq DNA sequence:
NC_000001.10  NT_167186.1  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
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UniProtKB/Swiss-Prot: MLP3C_HUMAN, Q9BXW4 (See protein sequence)
Recommended Name: Microtubule-associated proteins 1A/1B light chain 3C precursor  
Size: 147 amino acids; 16852 Da
Subunit: 3 different light chains, LC1, LC2 and LC3, can associate with MAP1A and MAP1B proteins (By similarity)
Subcellular location: Cytoplasm. Endomembrane system; Lipid-anchor. Cytoplasmic vesicle, autophagosome membrane;
Lipid-anchor. Note=LC3-II binds to the autophagic membranes
Secondary accessions: A0PJY8 A2RUP0

Explore the universe of human proteins at neXtProt for MAP1LC3C: NX_Q9BXW4 

Post-translational modifications:

  • The precursor molecule is cleaved by APG4B/ATG4B to form the cytosolic form, LC3-I. This is activated by APG7L/ATG7,
  • transferred to ATG3 and conjugated to phospholipid to form the membrane-bound form, LC3-II1


    REFSEQ proteins: NP_001004343.1  

    ENSEMBL proteins: 
    ENSP00000349785 


    Human Recombinant Proteins 
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    5/7 Gene Ontology (GO) cellular component terms (GO ID links to tree view) (see all 7):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000421 autophagic vacuole membrane IEA--
    GO:0005737 cytoplasm IEA--
    GO:0005776 autophagic vacuole ISS12740394
    GO:0005874 microtubule IEA--
    GO:0012505 endomembrane system IEA--
    About this table

    MAP1LC3C for ontologies           About GeneDecksing



    Antibodies for MAP1LC3C: 
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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    MAP1LC3C for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR004241 MAP1_LC3

    Graphical View of Domain Structure for InterPro Entry Q9BXW4

    ProtoNet protein and cluster: Q9BXW4

    1 Blocks protein family: IPB004241 Light chain 3 (LC3)

    UniProtKB/Swiss-Prot: MLP3C_HUMAN, Q9BXW4
    Similarity: Belongs to the MAP1 LC3 family


    (According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
    About This Section

    UniProtKB/Swiss-Prot: MLP3C_HUMAN, Q9BXW4
    Function: Probably involved in formation of autophagosomal vacuoles (autophagosomes) (By similarity)

    Inhib.
    RNA:
        
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    Gene
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    Cell
    Lines:
      
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    1 Gene Ontology (GO) molecular function term (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515 protein binding IPI19250911
    About this table

    MAP1LC3C for ontologies           About GeneDecksing


    (Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
    About This Section

        SABiosciences Custom Pathway-Focused PCR Arrays for MAP1LC3C 

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MAP1LC3C

    2 Interacting proteins for MAP1LC3C (Q9BXW41) via UniProtKB, MINT, and/or STRING
    InteractantInteraction Details
    GeneCardExternal ID(s)
    NBR1Q145961EBI-2603996,EBI-742698
    SQSTM1Q135011EBI-2603996,EBI-307104
    About this table

    1 Gene Ontology (GO) biological process term (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006914 autophagy IEA--
    About this table

    MAP1LC3C for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section
    Browse Small Molecules at Sigma-Aldrich
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for MAP1LC3C


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Millipore,
    siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
    Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
    About This Section

    Inhib.
    RNA:
         
    Browse for Gene Knock-down Tools from Millipore
    Browse Nano Scale siRNA at Sigma-Aldrich
    Sigma-Aldrich siRNA for MAP1LC3C
    Sigma-Aldrich shRNA for MAP1LC3C
    OriGene 29mer shRNA kits in GFP-retroviral vector (see all 2): MAP1LC3C
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    miRNA: Sigma-Aldrich microRNA Mimics for MAP1LC3C
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    Clones: Browse FLAG tag genes at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector: MAP1LC3C
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector: MAP1LC3C
    OriGene untagged cDNA clones in CMV expression vector: MAP1LC3C
    Browse 3'-UTR reporter clones for miRNA target validation 
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    Primers: OriGene genome-wide validated SYBR primer pairs: MAP1LC3C
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for MAP1LC3C: PPH57861A

    REFSEQ mRNAs for MAP1LC3C gene: 

    NM_001004343.2  

    Additional cDNA sequence: 

    AF276659.1 BC127722.1 BC132986.1 BC132988.1 

    2 DOTS entries:

    DT.95149060  DT.40261247 

    4 AceView cDNA sequences:

    NM_001004343 AF276659 BX282224 AA424268 

    highest scoring ESTs for MAP1LC3C:

    AF276659 AA424268 BC127722 BX282224 CN260933 NM_001004343 

    Unigene Cluster for MAP1LC3C:

    Microtubule-associated protein 1 light chain 3 gamma
    Hs.534971  [show with all ESTs]
    Unigene Representative Sequence: NM_001004343


    GeneLoc Exon Structure

    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000357246(uc001hzk.2)

    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Primers from OriGene and/or SABiosciences )
    About This Section

    MAP1LC3C expression in normal and diseased human tissues

    1  / 2  / 3

    2 probe-sets matching MAP1LC3C gene

    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    221697_at2, 3 U133-A 1 0.55 1.00 -- -- AF276659 0.60 1.00 0.82 1
    221697_at2 U133Plus2 1 0.55 1.00 -- -- -- -- -- -- --
    About this table
    Data from Genenote  (Publications) and GNF BioGPS
        About these images
    MAP1LC3C gene expression
    MAP1LC3C gene electronic northern expression
    MAP1LC3C gene sage expression
    About these images

    CGAP SAGE TAG: TGGGCAGGTG

    SOURCE GeneReport for Unigene cluster: Hs.534971

    UniProtKB/Swiss-Prot: MLP3C_HUMAN, Q9BXW4
    Tissue specificity: Most abundant in placenta, lung and ovary

    Primers: OriGene genome-wide validated SYBR primer pairs: MAP1LC3C
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for MAP1LC3C: PPH57861A
        SABiosciences Custom PCR Arrays for MAP1LC3C 


    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section

    Orthologs for MAP1LC3C gene from 5 species
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    MAP1LC3C1   -- microtubule-associated protein 1 light chain 3 gamma 87.95(n)
    86.92(a)
    611659  XM_849355.1  XP_854448.1 
    chimpanzee
    (Pan troglodytes)
    MAP1LC3C1   -- microtubule-associated protein 1 light chain 3 gamma 98.87(n)
    98.64(a)
    457857  XM_514305.2  XP_514305.2 
    cow
    (Bos taurus)
    MAP1LC3C1   -- microtubule-associated protein 1 light chain 3 gamma 88.66(n)
    85.71(a)
    507432  XM_584030.3  XP_584030.2 
    chicken
    (Gallus gallus)
    MAP1LC3C1   -- microtubule-associated protein 1 light chain 3 gamma 74.93(n)
    80.99(a)
    421504  XM_419549.2  XP_419549.2 
    zebrafish
    (Danio rerio)
    zgc:565651   -- zgc:56565 72.22(n)
    72.22(a)
    393268  NM_200298.2  NP_956592.1 
    About this table        Species with no ortholog for MAP1LC3C

    ENSEMBL Gene Tree for MAP1LC3C (if available)

    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section
    Paralogs for MAP1LC3C gene
    GABARAPL22  MAP1LC3B2  MAP1LC3A2  GABARAP2  GABARAPL32  MAP1LC3B22  GABARAPL12  

    MAP1LC3C for paralogs           About GeneDecksing



    (SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
    About This Section

    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for MAP1LC3C
         1 CNV: 8352
    QIAGEN SeqTarget long-range PCR primers for resequencing MAP1LC3C 

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    MAP1LC3C for disorders           About GeneDecksing

    OMIM: 609605


    Export disorders and mutations for MAP1LC3C gene to outside databases

    (Possibly Related Articles in Doctor's Guide)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
    About This Section

    10 PubMed articles for MAP1LC3C gene integrated from 7 sources:
    (articles sorted by number of sources associating them with MAP1LC3C)
    1. Post-translational modifications of three members of the human MAP1LC3 family and detection of a novel type of modification for MAP1LC3B. (PubMed id 12740394)1, 2, 3 He H.... Yu L. (2003)
    2. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (2006)
    3. HsAtg4B/HsApg4B/autophagin-1 cleaves the carboxyl termini of three human Atg8 homologues and delipidates microtubule-associated protein light chain 3- and GABAA receptor-associated protein-phospholipid conjugates. (PubMed id 15187094)1, 2 Tanida I....Kominami E. (2004)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. Network organization of the human autophagy system. (PubMed id 20562859)1 Behrends C....Harper J.W. (2010)
    6. A role for NBR1 in autophagosomal degradation of ubiquitinated substrates. (PubMed id 19250911)1 Kirkin V.... Johansen T. (2009)
    7. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PubMed id 15146197)1 Brandenberger R.... Stanton L.W. (2004)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    9. The cleavage of host cell proteins by HIV-1 protease. (PubMed id 8997639)1 Snasel J. and Pichova I. (1996)
    10. Proteolytic cleavage of microtubule-associated proteins by retroviral proteinases. (PubMed id 2212989)1 Wallin M....Danielson U.H. (1990)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 440738 HGNC: 13353 AceView: LOC440738 Ensembl:ENSG00000197769 euGenes: HUgn440738
    ECgene: MAP1LC3C H-InvDB: MAP1LC3C

    (According to HUGE)
    About This Section
      --

    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
      --

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from XenneX, Inc.)
    About This Section
    Patent Information for MAP1LC3C gene:
    Search GeneIP for patents involving MAP1LC3C

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
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    The GeneCards human gene database gene index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    MAP1LC3C gene at Home site.
    hostname: genecards db genecards_305 index build: 81e solr: 1.4