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TAS2R39 Gene

protein-coding   GIFtS: 40

GC07P137219
taste receptor, type 2, member 39
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases & Descriptions
taste receptor, type 2, member 391 2
Taste receptor type 2 member 572 3
T2R572 3
T2R392 3
OTTHUMP000002021022
taste receptor type 2 member 392

External Ids:    HGNC: 188861   Entrez Gene: 2592852   Ensembl: ENSG000002363987   UniProtKB: P595343   

Export aliases for TAS2R39 gene to outside databases

Previous GC identifers: GC00U991248 GC07P142274 GC07P142351 GC07P142397 GC07P142590 GC07P142880


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: T2R39_HUMAN, P59534
Function: Receptor that may play a role in the perception of bitterness and is gustducin-linked. May play a role in
sensing the chemical composition of the gastrointestinal content. The activity of this receptor may stimulate alpha
gustducin, mediate PLC-beta-2 activation and lead to the gating of TRPM5 (By similarity)

Gene Wiki entry for TAS2R39

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TAS2R39 gene promoter:
         C/EBPalpha   CP1A   NF-Y   NF-YA   FOXO1a   POU2F1   FOXD3   FOXL1   AML1a   FOXO4   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for TAS2R39

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q34   Ensembl cytogenetic band:  7q34   HGNC cytogenetic band: 7q34

TAS2R39 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TAS2R39 gene location

GeneLoc gene densities for chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07P137219:  view genomic region     (about GC identifiers)

Start:
137,218,655 bp from pter
End:
137,219,671 bp from pter
Size:
1,017 bases
Orientation:
plus strand

1 alternative location:
Chr7+ 142,880,512-142,881,528     
RefSeq DNA sequence:
NC_000007.13  NT_007914.15  NT_079596.2  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: T2R39_HUMAN, P59534 (See protein sequence)
Recommended Name: Taste receptor type 2 member 39  
Size: 338 amino acids; 38626 Da
Subcellular location: Membrane; Multi-pass membrane protein
Miscellaneous: Most taste cells may be activated by a limited number of bitter compounds; individual taste cells can
discriminate among bitter stimuli
Sequence caution: Sequence=AAM19321.1; Type=Frameshift; Positions=323;
PDB structures from and Proteopedia :
2GFZ (3D)    
Secondary accessions: A4FUI7 Q3ZCN6 Q645W4

Explore the universe of human proteins at neXtProt for TAS2R39: NX_P59534 

REFSEQ proteins: NP_795362.2  

ENSEMBL proteins: 
ENSP00000405095 


Human Recombinant Proteins 
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2 Gene Ontology (GO) cellular component terms (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0016020 membrane IEA--
GO:0016021 integral to membrane IEA--
About this table

TAS2R39 for ontologies           About GeneDecksing



Antibodies for TAS2R39: 
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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

TAS2R39 for domains           About GeneDecksing

1 InterPro domain/family:
 IPR007960 TAS2_rcpt

Graphical View of Domain Structure for InterPro Entry P59534

ProtoNet protein and cluster: P59534

1 Blocks protein family: IPB001400 Somatotropin hormone

UniProtKB/Swiss-Prot: T2R39_HUMAN, P59534
Similarity: Belongs to the G-protein coupled receptor T2R family


(According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
About This Section

UniProtKB/Swiss-Prot: T2R39_HUMAN, P59534
Function: Receptor that may play a role in the perception of bitterness and is gustducin-linked. May play a role in
sensing the chemical composition of the gastrointestinal content. The activity of this receptor may stimulate alpha
gustducin, mediate PLC-beta-2 activation and lead to the gating of TRPM5 (By similarity)

Inhib.
RNA:
    
Browse for Gene Knock-down Tools from Millipore
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Sigma-Aldrich siRNA for TAS2R39
Sigma-Aldrich shRNA Panels and shRNA for TAS2R39
OriGene 29mer shRNA kits in GFP-retroviral vector: TAS2R39
OriGene shRNA RFP: TAS2R39
OriGene basic RS shRNA: TAS2R39
OriGene siRNA: TAS2R39
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of TAS2R39 
miRNA:Browse microRNA Mimics at Sigma-Aldrich
Browse microRNA target validation systems at Sigma-Aldrich 
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of TAS2R39 
Search SABiosciences for Assays for microRNAs that regulate TAS2R39

Gene
Editing:
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Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
Browse iPSC Reprogramming Factors at Sigma-Aldrich
OriGene GFP tagged cDNA clones in CMV expression vector: TAS2R39
OriGene Myc/DDK tagged cDNA clones in CMV expression vector: TAS2R39
OriGene untagged cDNA clones in CMV expression vector (see all 2): TAS2R39
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Cell
Lines:
  
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2 Gene Ontology (GO) molecular function terms (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0004872 receptor activity IEA--
GO:0004930 G-protein coupled receptor activity IEA--
About this table

TAS2R39 for ontologies           About GeneDecksing


(Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
About This Section


TAS2R39 for pathways           About GeneDecksing

1 Kegg Pathway  (Kegg details for TAS2R39):
    hsa04742 Taste transduction

    SABiosciences Custom Pathway-Focused PCR Arrays for TAS2R39 

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TAS2R39

3 Gene Ontology (GO) biological process terms (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0007186 G-protein coupled receptor protein signaling pathway ----
GO:0050896 response to stimulus IEA--
GO:0050909 sensory perception of taste IEA--
About this table

TAS2R39 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section
Browse Small Molecules at Sigma-Aldrich
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for TAS2R39


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Millipore,
siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
About This Section

Inhib.
RNA:
     
Browse for Gene Knock-down Tools from Millipore
Browse Nano Scale siRNA at Sigma-Aldrich
Sigma-Aldrich siRNA for TAS2R39
Sigma-Aldrich shRNA Panels and shRNA for TAS2R39
OriGene 29mer shRNA kits in GFP-retroviral vector: TAS2R39
OriGene shRNA RFP: TAS2R39
OriGene basic RS shRNA: TAS2R39
OriGene siRNA: TAS2R39
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of TAS2R39 
miRNA: Browse microRNA Mimics at Sigma-Aldrich
Browse microRNA target validation systems at Sigma-Aldrich 
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of TAS2R39 
Search SABiosciences for Assays for microRNAs that regulate TAS2R39
Clones: Browse FLAG tag genes at Sigma-Aldrich
OriGene GFP tagged cDNA clones in CMV expression vector: TAS2R39
OriGene Myc/DDK tagged cDNA clones in CMV expression vector: TAS2R39
OriGene untagged cDNA clones in CMV expression vector (see all 2): TAS2R39
Browse 3'-UTR reporter clones for miRNA target validation 
Browse OriGene MicroRNA Expression Plasmids 
GenScript Custom cDNA clone Services for TAS2R39 
Primers: OriGene genome-wide validated SYBR primer pairs: TAS2R39
Browse OriGene validated miRNA SYBR primer pairs 
SABiosciences RT2 qPCR Primer Assay for TAS2R39: PPH60311A

REFSEQ mRNAs for TAS2R39 gene: 

NM_176881.2  

Additional cDNA sequence: 

BC100947.2 BC100948.2 BC114952.1 

1 DOTS entry:

DT.100702950 

1 AceView cDNA sequence:

NM_176881 

highest scoring ESTs for TAS2R39:

NM_176881 BC100947 BC100948 

Unigene Cluster for TAS2R39:

Taste receptor, type 2, member 39
Hs.553660
Unigene Representative Sequence: NM_176881


GeneLoc Exon Structure

1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000446620(uc011ksw.1)

(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Primers from OriGene and/or SABiosciences )
About This Section

TAS2R39 expression in normal and diseased human tissues

1  / 2

1 probe-set matching TAS2R39 gene

Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
1553553_at2 U133Plus2 1 0.46 1.00 -- -- -- -- -- -- --
About this table
Data from Genenote  (Publications) and GNF BioGPS
    About these images
TAS2R39 gene expression
TAS2R39 gene electronic northern expression
TAS2R39 gene sage expression
About these images

CGAP SAGE TAG: GCTGCCTACC

SOURCE GeneReport for Unigene cluster: Hs.553660

UniProtKB/Swiss-Prot: T2R39_HUMAN, P59534
Tissue specificity: Expressed in subsets of taste receptor cells of the tongue and exclusively in gustducin-positive
cells

Primers: OriGene genome-wide validated SYBR primer pairs: TAS2R39
Browse OriGene validated miRNA SYBR primer pairs 
SABiosciences RT2 qPCR Primer Assay for TAS2R39: PPH60311A
    SABiosciences Custom PCR Arrays for TAS2R39 


(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for TAS2R39 gene from 4 species
Organism Gene Locus Description Human
Similarity
NCBI accessions
chimpanzee
(Pan troglodytes)
TAS2R391   -- taste receptor, type 2, member 39 99.7(n)
99.41(a)
472612  NM_001009130.1  NP_001009130.1 
cow
(Bos taurus)
TAS2R391   -- taste receptor, type 2, member 39 78.11(n)
64.2(a)
530866  XM_609345.3  XP_609345.3 
rat
(Rattus norvegicus)
Tas2r391   -- taste receptor, type 2, member 39 69.73(n)
54.75(a)
680188  XM_001056060.1  XP_001056060.1 
mouse
(Mus musculus)
Tas2r1391 , 5 6 (20.40 cM)5
taste receptor, type 2, member 1391, 5 72.35(n)1
57.53(a)1
3531481  NM_181275.11  NP_851792.11 
 AF5327905  BC1403385  (see all 7)
About this table        Species with no ortholog for TAS2R39

ENSEMBL Gene Tree for TAS2R39 (if available)

(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
Paralogs for TAS2R39 gene
TAS2R412  TAS2R52  TAS2R382  TAS2R402  TAS2R42  TAS2R162  TAS2R602  TAS2R12  

TAS2R39 for paralogs           About GeneDecksing



(SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section

10/25 NCBI SNPs in TAS2R39 are shown (see all 25)
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidChr 7 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
----------
rs41038171,2
H142881285(+) CACATG/AGGGGC 2 /I /M mis1 ref14Minor allele frequency- A:0.00NS EA 414
rs47266001,2
C,F,A,H,142881540(+) CCCAAG/AAAGAC 1 -- ng3117Minor allele frequency- A:0.10EA NA NS 1302
rs69649221,2
C142879809(+) GGGGAC/TATAAA 1 -- ng514Minor allele frequency- T:0.00NS EA 420
rs106083691,2
--142879687(+) tgtgt-/GTATGAT 1 -- ng510--------
rs341691901,2
C,F,142881100(-) TTTCTT/CAGTGG 2 /K /E ref1 mis16Minor allele frequency- C:0.02NA NS EA WA 540
rs354748771,2
C,F,142881089(-) AGTTGG/AAGGAG 2 /S /F ref1 mis15Minor allele frequency- A:0.01NA NS EA 490
rs567828331,2
--142879133(+) TGCAA-/ATGGGT 1 -- ng510--------
rs590310911,2
--142879272(+) AAAACC/GTTTAT 1 -- ng510--------
rs617456131,2
C,142880830(+) CTGAAG/AACGCT 2 /N /D mis1 ref11Minor allele frequency- A:0.50WA 2
rs731706831,2
C,F,142880322(+) GCCTCA/GTTATT 1 -- ng511Minor allele frequency- G:0.03NA 72
About this table

HapMap Linkage Disequilibrium images for TAS2R39 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 3 variations for TAS2R39
     3 CNVs: 94910 52137 64972

QIAGEN SeqTarget long-range PCR primers for resequencing TAS2R39 

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
About This Section
  --

(Possibly Related Articles in Doctor's Guide)
About This Section
  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
About This Section

8 PubMed articles for TAS2R39 gene integrated from 7 sources:
(articles sorted by number of sources associating them with TAS2R39)
  1. The human TAS2R16 receptor mediates bitter taste in response to beta- glucopyranosides. (PubMed id 12379855)1, 2, 3 Bufe B.... Meyerhof W. (2002)
  2. Evolution of bitter taste receptors in humans and apes. (PubMed id 15496549)1, 2 Fischer A.... Paeaebo S. (2005)
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
  4. Coding of sweet, bitter, and umami tastes: different receptor cells sharing similar signaling pathways. (PubMed id 12581520)1, 2 Zhang Y.... Ryba N.J. (2003)
  5. Molecular mechanisms of bitter and sweet taste transduction. (PubMed id 11696554)1, 2 Margolskee R.F. (2002)
  6. Receptors for bitter and sweet taste. (PubMed id 12139982)1, 2 Montmayeur J.-P. and Matsunami H. (2002)
  7. Lineage-specific loss of function of bitter taste receptor genes in humans and nonhuman primates. (PubMed id 15744053)1 Go Y.... Takahata N. (2005)
  8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 259285 HGNC: 18886 AceView: TAS2R39 Ensembl:ENSG00000236398 euGenes: HUgn259285
ECgene: TAS2R39 Kegg: 259285 H-InvDB: TAS2R39

(According to HUGE)
About This Section
  --

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
  --

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from XenneX, Inc.)
About This Section
Patent Information for TAS2R39 gene:
Search GeneIP for patents involving TAS2R39

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
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About This Section

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