Department of Bioinformatics and Computational Biology

Publications Supplements Data

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Publications, Supplements and Data Sets

Here you can find an extensive list of articles published by our faculty members, along with Supplementary materials such as tables, datasets and source code. You can sort the table by clicking on the column headers.


There are 595 articles. Download the entire list in BibTeX or EndNote format.

Year Article Supplementary Material
2015 Li et al. TANRIC: An interactive open platform to explore the function of lncRNAs in cancer.
Cancer Res. , Jul 2015     BibTeX EndNote    URL
2013 Yoshihara et al. Inferring tumour purity and stromal and immune cell admixture from expression data.
Nat Commun 4:2612, 2013    Abstract   BibTeX EndNote    URL
2013 Yang et al. Predicting time to ovarian carcinoma recurrence using protein markers.
J. Clin. Invest. 123(9):3740-50, Sep 2013    Abstract   BibTeX EndNote    URL
2013 Li et al. TCPA: a resource for cancer functional proteomics data.
Nat. Methods 10(11):1046-7, Nov 2013     BibTeX EndNote    URL
2012 Tucker et al. Do Intermediate Radiation Doses Contribute to Late Rectal Toxicity? An Analysis of Data from Radiation Therapy Oncology Group Protocol 94-06.
Int J Radiat Oncol Biol Phys , Feb 2012    Abstract   BibTeX EndNote    URL
2012 Li et al. Comparative Analysis of Somatic Copy-number Alterations across Different Human Cancer Types Reveals Two Distinct Classes of Breakpoint Hotspots.
Hum. Mol. Genet. , Aug 2012    Abstract   BibTeX EndNote    URL
2012 Ding et al. Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing.
Nature 481(7,382):506-10, Jan 2012    Abstract   BibTeX EndNote    URL
2012 Levin et al. Protein and phosphoprotein levels in glioma and adenocarcinoma cell lines grown in normoxia and hypoxia in monolayer and three-dimensional cultures.
Proteome Sci 10(1):5, 2012    Abstract   BibTeX EndNote    URL
2012 Waldenström et al. Relative Importance of Hip and Sacral Pain Among Long-Term Gynecological Cancer Survivors Treated with Pelvic Radiotherapy and Their Relationships to Mean Absorbed Doses.
Int J Radiat Oncol Biol Phys , Feb 2012    Abstract   BibTeX EndNote    URL
2012 Linderman et al. CytoSPADE: High-Performance Analysis and Visualization of High-Dimensional Cytometry Data.
Bioinformatics , Jul 2012    Abstract   BibTeX EndNote    URL
2012 Caudle et al. American College of Surgeons Oncology Group (ACOSOG) Z0011: Impact on Surgeon Practice Patterns.
Ann Surg Oncol , Jul 2012    Abstract   BibTeX EndNote    URL
2012 Zong et al. The cellular origin for malignant glioma and prospects for clinical advancements.
Expert Rev. Mol. Diagn. 12(4):383-94, May 2012    Abstract   BibTeX EndNote    URL
2012 Kamal et al. REST regulates oncogenic properties of glioblastoma stem cells.
Stem Cells 30(3):405-14, Mar 2012    Abstract   BibTeX EndNote    URL
2012 Kühn et al. High-resolution genomic profiling of adult and pediatric core-binding factor acute myeloid leukemia reveals new recurrent genomic alterations.
Blood 119(10):e67-75, Mar 2012    Abstract   BibTeX EndNote    URL
2012 Caudle et al. Local-regional control according to surrogate markers of breast cancer subtypes and response to neoadjuvant chemotherapy in breast cancer patients undergoing breast conserving therapy.
Breast Cancer Res 14(3):R83, May 2012    Abstract   BibTeX EndNote    URL
2012 Zheng et al. Studying a complex tumor: potential and pitfalls.
Cancer J 18(1):107-14, Jan-Feb 2012    Abstract   BibTeX EndNote    URL
2012 Bolton et al. Association between BRCA1 and BRCA2 mutations and survival in women with invasive epithelial ovarian cancer.
JAMA 307(4):382-90, Jan 2012     BibTeX EndNote    URL
2012 James et al. Functional characterization of CLPTM1L as a lung cancer risk candidate gene in the 5p15.33 locus.
PLoS ONE 7(6):e36116, 2012    Abstract   BibTeX EndNote    URL
2012 N/A Comprehensive molecular portraits of human breast tumours.
Nature 490(7,418):61-70, Oct 2012    Abstract   BibTeX EndNote    URL
2012 Tucker et al. Incorporating Single-nucleotide Polymorphisms Into the Lyman Model to Improve Prediction of Radiation Pneumonitis.
Int J Radiat Oncol Biol Phys , Apr 2012    Abstract   BibTeX EndNote    URL

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