Department of Bioinformatics and Computational Biology

Publications Supplements Data

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Publications, Supplements and Data Sets

Here you can find an extensive list of articles published by our faculty members, along with Supplementary materials such as tables, datasets and source code. You can sort the table by clicking on the column headers.

There are 595 articles. Download the entire list in BibTeX or EndNote format.

Year Article Supplementary Material
2015 Li et al. TANRIC: An interactive open platform to explore the function of lncRNAs in cancer.
Cancer Res. , Jul 2015     BibTeX EndNote    URL
2013 Li et al. TCPA: a resource for cancer functional proteomics data.
Nat. Methods 10(11):1046-7, Nov 2013     BibTeX EndNote    URL
2013 Yoshihara et al. Inferring tumour purity and stromal and immune cell admixture from expression data.
Nat Commun 4:2612, 2013    Abstract   BibTeX EndNote    URL
2013 Yang et al. Predicting time to ovarian carcinoma recurrence using protein markers.
J. Clin. Invest. 123(9):3740-50, Sep 2013    Abstract   BibTeX EndNote    URL
2012 Yuan et al. Predicting the lethal phenotype of the knockout mouse by integrating comprehensive genomic data.
Bioinformatics 28(9):1246-52, May 2012    Abstract   BibTeX EndNote    URL
2012 Weinstein Drug discovery: Cell lines battle cancer.
Nature 483(7,391):544-5, Mar 2012    Abstract   BibTeX EndNote    URL
2012 Li et al. SurvNet: a web server for identifying network-based biomarkers that most correlate with patient survival data.
Nucleic Acids Res. 40:W123-6, Jul 2012    Abstract   BibTeX EndNote    URL
2012 Welch et al. The origin and evolution of mutations in acute myeloid leukemia.
Cell 150(2):264-78, Jul 2012    Abstract   BibTeX EndNote    URL
2012 Tucker et al. Use of fractional dose-volume histograms to model risk of acute rectal toxicity among patients treated on RTOG 94-06.
Radiother Oncol 104(1):109-13, Jul 2012    Abstract   BibTeX EndNote    URL
2012 Ihle et al. Effect of KRAS oncogene substitutions on protein behavior: implications for signaling and clinical outcome.
J. Natl. Cancer Inst. 104(3):228-39, Feb 2012    Abstract   BibTeX EndNote    URL
2012 Young et al. Background mutations in parental cells account for most of the genetic heterogeneity of induced pluripotent stem cells.
Cell Stem Cell 10(5):570-82, May 2012    Abstract   BibTeX EndNote    URL
2012 Tucker et al. Predicting Pneumonitis Risk: A Dosimetric Alternative to Mean Lung Dose.
Int J Radiat Oncol Biol Phys , May 2012     BibTeX EndNote    URL
2012 Beekman et al. Sequential gain of mutations in severe congenital neutropenia progressing to acute myeloid leukemia.
Blood 119(22):5071-7, May 2012    Abstract   BibTeX EndNote    URL
2012 Challen et al. Dnmt3a is essential for hematopoietic stem cell differentiation.
Nat. Genet. 44(1):23-31, Jan 2012    Abstract   BibTeX EndNote    URL
2012 Karn et al. Melanoma antigen family A identified by the bimodality index defines a subset of triple negative breast cancers as candidates for immune response augmentation.
Eur. J. Cancer 48(1):12-23, Jan 2012    Abstract   BibTeX EndNote    URL
2012 Byers et al. Proteomic Profiling Identifies Dysregulated Pathways in Small Cell Lung Cancer and Novel Therapeutic Targets Including PARP1.
Cancer Discov 2(9):798-811, Sep 2012    Abstract   BibTeX EndNote    URL
2012 Akli et al. Low molecular weight cyclin E is associated with p27-resistant, high-grade, high-stage and invasive bladder cancer.
Cell Cycle 11(7):1468-76, Apr 2012    Abstract   BibTeX EndNote    URL
2012 Tzelepi et al. Modeling a lethal prostate cancer variant with small-cell carcinoma features.
Clin. Cancer Res. 18(3):666-77, Feb 2012    Abstract   BibTeX EndNote    URL
2012 Tsao et al. Concomitant inhibition of DNA methyltransferase and BCL-2 protein function synergistically induce mitochondrial apoptosis in acute myelogenous leukemia cells.
Ann. Hematol. , Aug 2012    Abstract   BibTeX EndNote    URL
2012 Neeley et al. Surface Adjustment of Reverse Phase Protein Arrays using Positive Control Spots.
Cancer Inform 11:77-86, 2012    Abstract   BibTeX EndNote    URL

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