The complete slide module provides the
definition of the
complete.slide
class.
See the bottom of the page for an example of how the class can be used.
a
and b
) and a character string
(name
).listing
that
contains attributes filename
and
varname
. The latter is used both as the target of an
assignment as well as the internal name
of the
object. The optional root
argument is a character
string containing a directory name. It defaults to the empty
string. If you supply one, then it must terminate with a forward
slash.listing
that
contains attributes filename
and
varname
. The latter is used both as the target of an
assignment as well as the internal name
of the
object. The optional root
argument is a character
string containing a directory name. It defaults to the empty
string. If you supply one, then it must terminate with a forward
slash.f.load.cg4
.name
argument is used as a label. The optional
uselog
determines whether the data is log-transformed first;
the default value is false.name
argument is used as a label. The optional uselog
argument determines whether or not the data is log-transformed; the default
value is false. The optional ef
argument is an
extractor function; the default value is
bkgd.extractor
. Any additional arguments are passed along to the
extractor.name
argument is used as a label. The optional which
argument is an extractor; its default value is standard.channel
. All
remaining arguments are passed along to the extractor.An object of the complete.slide
class
represents a single glass microarray used in a two-color fluorescence
experiment. The typical way to construct such an object is to read in
a file that was produced in ArrayVision. You can quickly generate a large
number of graphs (as part of our basic analysis) just by applying the
analyze
method.
x <- f.load.cg4.file('CG01180.txt', 'demo') summary(x) plot(x) evaluate.background(x) opar <- par(mfrow=c(2,1)) image(x) image(x, ef=svol.extractor) par(opar)