Classes and methods for "class discovery" with microarrays or proteomics


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Documentation for package `ClassDiscovery' version 1.3

User Guides and Package Vignettes

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aspectHeatmap Heatmap with control over the aspect ratio
bluescale Color Schemes for Images and Heat Maps
blueyellow Color Schemes for Images and Heat Maps
BootstrapClusterTest The BootstrapClusterTest Class
BootstrapClusterTest-class The BootstrapClusterTest Class
cluster3 Cluster a Dataset Three Ways
ClusterTest The ClusterTest Class
ClusterTest-class The ClusterTest Class
cutHclust Get the List of Classes From A Clustering Algorithm
cutKmeans Get the List of Classes From A Clustering Algorithm
cutPam Get the List of Classes From A Clustering Algorithm
cutRepeatedKmeans Get the List of Classes From A Clustering Algorithm
distanceMatrix Distance Matrix Computation
GenePCA The GenePCA Class
GenePCA-class The GenePCA Class
greenscale Color Schemes for Images and Heat Maps
hclust-class An S4 hclust class
hist,ClusterTest-method The ClusterTest Class
image,ClusterTest-method The ClusterTest Class
jetColors Color Schemes for Images and Heat Maps
Mosaic The Mosaic Class
Mosaic-class The Mosaic Class
PCanova The PCanova Class
PCanova-class The PCanova Class
PerturbationClusterTest The PerturbationClusterTest Class
PerturbationClusterTest-class The PerturbationClusterTest Class
plot,GenePCA,missing-method The GenePCA Class
plot,Mosaic,missing-method The Mosaic Class
plot,PCanova,missing-method The PCanova Class
plot,SamplePCA,missing-method The SamplePCA Class
plotColoredClusters Plot Dendrograms with Color-Coded Labels
pltree,Mosaic-method The Mosaic Class
pltree,PCanova-method The PCanova Class
predict,SamplePCA-method The SamplePCA Class
redgreen Color Schemes for Images and Heat Maps
redscale Color Schemes for Images and Heat Maps
repeatedKmeans Get the List of Classes From A Clustering Algorithm
SamplePCA The SamplePCA Class
SamplePCA-class The SamplePCA Class
screeplot,SamplePCA-method The SamplePCA Class
summary,BootstrapClusterTest-method The BootstrapClusterTest Class
summary,ClusterTest-method The ClusterTest Class
summary,Mosaic-method The Mosaic Class
summary,PCanova-method The PCanova Class
summary,PerturbationClusterTest-method The PerturbationClusterTest Class
summary,SamplePCA-method The SamplePCA Class