Basic functions for microarray pre-processing

[Package List] [Top]

Documentation for package `PreProcess' version 2.5.0

User Guides and Package Vignettes

Read overview or browse directory.

Help Pages

analyze OOMPA Generic Functions
analyze,CompleteChannel-method The CompleteChannel class
as.data.frame,CompleteChannel-method The CompleteChannel class
Channel The Channel class
Channel-class The Channel class
channelize Object-oriented conversion from CompleteChannel to Channel
channelize,CompleteChannel-method The CompleteChannel class
ChannelType The ChannelType class
ChannelType-class The ChannelType class
COLOR.BAD.REPLICATE Pre-defined colors for microarray plots
COLOR.BORING Pre-defined colors for microarray plots
COLOR.BOTTOM.TEN Pre-defined colors for microarray plots
COLOR.CENTRAL.LINE Pre-defined colors for microarray plots
COLOR.CONFIDENCE.CURVE Pre-defined colors for microarray plots
COLOR.EXPECTED Pre-defined colors for microarray plots
COLOR.FITTED Pre-defined colors for microarray plots
COLOR.FOLD.DIFFERENCE Pre-defined colors for microarray plots
COLOR.OBSERVED Pre-defined colors for microarray plots
COLOR.PERMTEST Pre-defined colors for microarray plots
COLOR.SIGNIFICANT Pre-defined colors for microarray plots
COLOR.TOP.TEN Pre-defined colors for microarray plots
COLOR.WORST.REPLICATE Pre-defined colors for microarray plots
colorCode The ColorCoding class
ColorCodedPair The ColorCodedPair class
ColorCodedPair-class The ColorCodedPair class
ColorCoding The ColorCoding class
ColorCoding-class The ColorCoding class
CompleteChannel The CompleteChannel class
CompleteChannel-class The CompleteChannel class
ellipse OOMPA graphical utility functions
f.above.thresh OOMPA Statistical Utility Functions
f.cord OOMPA Statistical Utility Functions
f.oneway.rankings OOMPA Statistical Utility Functions
f.qq OOMPA graphical utility functions
f.qt OOMPA graphical utility functions
fliplr OOMPA Matrix Utility Functions
flipud OOMPA Matrix Utility Functions
getDesign The ChannelType class
hist,Channel-method The Channel class
image,Channel-method The Channel class
image,CompleteChannel-method The CompleteChannel class
makeDefaultPipeline The Pipeline class
Pipeline The Pipeline class
Pipeline-class The Pipeline class
PIPELINE.MDACC.DEFAULT The Pipeline class
PIPELINE.STANDARD The Pipeline class
plot,Channel,missing-method The Channel class
plot,ColorCodedPair,missing-method The ColorCodedPair class
plot,CompleteChannel,missing-method The CompleteChannel class
print,Channel-method The Channel class
print,ChannelType-method The ChannelType class
print,CompleteChannel-method The CompleteChannel class
PROC.BACKGROUND The CompleteChannel class
PROC.CORRECTED.SIGNAL The CompleteChannel class
PROC.GLOBAL.NORMALIZATION The Processor class
PROC.LOG.TRANSFORM The Processor class
PROC.MEDIAN.EXPRESSED.NORMALIZATION The Processor class
PROC.NEG.CORRECTED.SIGNAL The CompleteChannel class
PROC.SD.SIGNAL The CompleteChannel class
PROC.SIGNAL The CompleteChannel class
PROC.SIGNAL.TO.NOISE The CompleteChannel class
PROC.SUBSET.MEAN.NORMALIZATION The Processor class
PROC.SUBSET.NORMALIZATION The Processor class
PROC.SUBTRACTOR The Processor class
PROC.THRESHOLD The Processor class
process OOMPA Generic Functions
process,ANY,Pipeline-method The Pipeline class
process,Channel,Processor-method The Processor class
process,CompleteChannel,Processor-method The CompleteChannel class
process,Processor-method The Processor class
Processor The Processor class
Processor-class The Processor class
setDesign The ChannelType class
stdize OOMPA Statistical Utility Functions
summary,Channel-method The Channel class
summary,ChannelType-method The ChannelType class
summary,CompleteChannel-method The CompleteChannel class
summary,Pipeline-method The Pipeline class
summary,Processor-method The Processor class