Data Uploads






Secondaries


Model Downloads




Animated

Model Download Parameters

Scale:
LB Field:
Name Field:
Pathway Field:
Compartment Field:

Image Downloads


Download Scales

Graph Coloring

Metabolite
Reaction
Fixed Metabolite
Fixed Reaction
Edge
Metabolites with size data
Reactions with size data
Links with link width data

Reaction Coloring


- Minimum Flux
- Maximum Flux

Metabolite Coloring


- Minimum Concentration
- Maximum concentration

Reference Node Color

Reference Node

Link Strain Color

Link Strain Color

Graph Looks

Label Size
Added Text Size
Link Width
Node size
Reference Node size
Arrow Size
View Size Reference

Reaction Size

- Maximum Size
- Minimum Size
- Size Scale

Metabolite Size

- Maximum Size
- Minimum Size
- Size Scale

Link Width

- Maximum Size
- Minimum Size
- Size Scale

Simulation Parameters

Link Repulsion Strength
Node Collision Buffer
Node Repulsion Strength
Inertia
Center Strength
Secondary Strength
Path Execution Timeout (s)
Center Size
Pretify Size

Naming

Primary Metabolites:
Secondary Metabolites:
Reactions:

Reversibility

Node Shape

- Reaction Nodes
- Metabolite Nodes

Welcome to SAMMI







Demo:


Modes:

Arrows:

Tooltips:

Hide Rxns:


Move Labels (m):

Link Strain:


Graph Manipulations:

Reverse Flux

Subgraph Manipulations:


Search:


Focus RegExp

Arranging:


Reverse

Text and Shapes:


Shelved Metabolites:


Commits:

Description:


Add Nodes and Edges:

Reaction:
Metabolite: