# Copyright (C) 2012 Jerry Fowler (rgfowler@mdanderson.org)
# Distributed under GPL. see <http://www.gnu.org/licenses/>
#
# Please refer to http://varianttools.sourceforge.net/Annotation/New
# for a description of the format of this file.
#

[linked fields]
hg19=chr, pos, ref, alt
hg18=chr, hg18_pos, ref, alt

[data sources]
description=dbNSFP version 2.4, maintained by Xiaoming Liu from UTSPH. Please cite
	"Liu X, Jian X, and Boerwinkle E. 2011. dbNSFP: a lightweight database of human
	non-synonymous SNPs and their functional predictions. Human Mutation. 32:894-899" and
	"Liu X, Jian X, and Boerwinkle E. 2013. dbNSFP v2.0: A Database of Human Nonsynonymous
	SNVs and Their Functional Predictions and Annotations. Human Mutation. 34:E2393-E2402."
	if you find this database useful.
version=hg18_hg19_2_4
anno_type=variant
source_url=http://dbnsfp.houstonbioinformatics.org/dbNSFPzip/dbNSFPv2.4.zip
direct_url=annoDB/dbNSFP-hg18_hg19_2_4.DB.gz	f0c9733887dc1984162913cb5181ac78
source_type=txt
source_pattern=dbNSFP2.4_variant.chr

[chr]
index=1
type=VARCHAR(20) NOT NULL
comment=Chromosome number

[pos]
index=2
type=INTEGER NOT NULL
comment=physical position on the chromosome as to hg19 (1-based coordinate)

[ref]
index=3
type=CHAR(1) NOT NULL
comment=Reference nucleotide allele (as on the + strand)

[alt]
index=4
type=CHAR(1) NOT NULL
comment=Alternative nucleotide allele (as on the + strand)

[aaref]
index=5
type=CHAR(1) NULL
comment=reference amino acid

[aaalt]
index=6
type=CHAR(1) NULL
comment=alternative amino acid

[hg18_pos]
index=7
type=INTEGER NULL
adj=Nullify('.')
comment=physical position on the chromosome as to hg19 (1-based coordinate)

[genename]
index=8
type=VARCHAR(48) NULL
adj=Nullify('.')
comment=common gene name, if the NScan be assigned to multiple genes, gene names are separated
  by ";"

[Uniprot_acc]
index=9
type=VARCHAR(128) NULL
adj=Nullify('.')
comment=Uniprot accession number. Multiple entries separated by ";".

[Uniprot_id]
index=10
type=VARCHAR(64) NULL
adj=Nullify('.')
comment=Uniprot ID number. Multiple entries separated by ";".

[Uniprot_aapos]
index=11
type=VARCHAR(128) NULL
adj=Nullify('.')
comment=amino acid position as to Uniprot. Multiple entries separated by ";".

[Interpro_domain]
index=12
type=CHAR(48) NULL
adj=Nullify('.')
comment=Interpro_domain: domain or conserved site on which the variant locates. Domain annotations come from Interpro database. The number in the brackets following a specific domain is the count of times Interpro assigns the variant position to that domain, typically coming from different predicting databases. Multiple entries separated by ";".

[cds_strand]
index=13
type=CHAR(1)
adj=Nullify('.')
comment=coding sequence (CDS) strand (+ or -)

[refcodon]
index=14
type=char(1)
adj=Nullify('.')
comment=reference codon

[SLR_test_statistic]
index=15
type=FLOAT NULL
adj=Nullify('.')
comment=SLR test statistic for testing natural selection on codons. A negative value indicates negative selection, and a positive value indicates positive selection. Larger magnitude of the value suggests stronger evidence.

[codonpos]
index=16
type=VARCHAR(128) NULL
adj=Nullify('.')
comment=position on the codon (1, 2 or 3), multiple entries are separated by ;

[fold_degenerate]
index=17
type=VARCHAR(20)
adj=Nullify('.')
comment=A list of degenerate type (0, 2 or 3), separated by ;

[Ancestral_allele]
index=18
type=CHAR(1)
adj=Nullify('.')
comment=Ancestral allele (based on 1000 genomes reference data). The following comes from its original README file: ACTG - high-confidence call, ancestral state supproted by the other two sequences actg - low-confindence call, ancestral state supported by one sequence only N    - failure, the ancestral state is not supported by any other sequence -    - the extant species contains an insertion at this postion .    - no coverage in the alignment

[Ensembl_geneid]
index=19
type=VARCHAR(48) NULL
adj=Nullify('.')
comment=Ensembl gene id

[Ensembl_transcriptid]
index=20
type=VARCHAR(48) NULL
adj=Nullify('.')
comment=Ensembl transcript ids (separated by ";")

[aapos]
index=21
type=VARCHAR(48) NULL
adj=Nullify('.')
comment=amino acid position as to the protein "-1" if the variant is a splicing site SNP (2bp on each end of an intron), Multiple values separated by ;

[aapos_SIFT]
index=22
type=VARCHAR(255) NULL
adj=Nullify('.')
comment=ENSP id and amino acid positions corresponding to SIFT scores.
	Multiple entries separated by ";"

[aapos_FATHMM]
index=23
type=VARCHAR(255) NULL
adj=Nullify('.')
comment=aapos_FATHMM: ENSP id and amino acid positions corresponding to FATHMM scores.
	Multiple entries separated by ";"

[SIFT_score]
index=24
type=FLOAT NULL
adj=lambda x: None if x.strip() == '.' else max([float(z) for z in x.split(';')])
comment=The same as SIFT_score_all but is of type FLOAT and is the minimal score when multiple scores are available.

[SIFT_score_all]
index=24
type=VARCHAR(24) NULL
adj=Nullify('.')
comment=SIFT scores. If a score is smaller than 0.05 the corresponding NS is predicted as "D(amaging)";
	otherwise it is predicted as "T(olerated)". Multiple scores are separated by ;

[SIFT_score_rankscore]
index=25
type=FLOAT NULL
adj=Nullify('.')
comment=Original scores were first converted to SIFTnew=1-SIFTori,
		then ranked among all SIFTnew scores in dbNSFP. The rankscore is the ratio of
		the rank the SIFTnew score over the total number of SIFTnew scores in dbNSFP.
		If there are multiple scores, only the most damaging (largest) rankscore is presented.
		The rankscores range from 0.02654 to 0.87932.

[SIFT_pred]
index=26
type=VARCHAR(1) NULL
adj=lambda x: None if x.strip() == '.' else ('D' if 'D' in x else ('T' if 'T' in x else '.'))
comment="D" if "D" appears in SIFT_pred_all, "T" otherwise.

[SIFT_pred_all]
index=26
type=VARCHAR(255) NULL
adj=Nullify('.')
comment=If SIFTori is smaller than 0.05 (SIFTnew>0.95) the corresponding NS is predicted as
	"D(amaging)"; otherwise it is predicted as "T(olerated)".

[Polyphen2_HDIV_score]
index=27
type=FLOAT NULL
adj=lambda x: None if x.strip() == '.' else max([float(z) for z in x.split(';')])
comment=The maximum (most damaging) value of Polyphen2 score based on HumDiv, i.e. hdiv_prob.
	Use Polyphen2_HDIV_score_all to get a list of all scores.

[Polyphen2_HDIV_score_all]
index=27
type=VARCHAR(255)
adj=Nullify('.')
comment=Polyphen2 score based on HumDiv, i.e. hdiv_prob. The score ranges from 0 to 1, and the corresponding
	prediction is "probably damaging" if it is in [0.957,1]; "possibly damaging" if it is in [0.453,0.956]; "benign" if it is in [0,0.452]. Score cutoff for binary classification is 0.5, i.e. the prediction is "neutral" if the score is smaller than 0.5 and "deleterious" if the score is larger than 0.5. Multiple entries separated by ";".

[Polyphen2_HDIV_rankscore]
index=28
type=VARCHAR(255)
adj=Nullify('.')
comment=Polyphen2 HDIV scores were first ranked among all HDIV scores
		in dbNSFP. The rankscore is the ratio of the rank the score over the total number of
		the scores in dbNSFP. If there are multiple scores, only the most damaging (largest)
		rankscore is presented. The scores range from 0.02656 to 0.89917.

[Polyphen2_HDIV_pred]
index=29
type=VARCHAR(1) NULL
adj=lambda x: None if x.strip() == '.' else ('D' if 'D' in x else ('P' if 'P' in x else ('B' if 'B' in x else '.')))
comment="D" if any of the predictions in Polyphen2_HDIV_pred_all is "D". Otherwise it can be "P" is any
       prediction is "P", or "B" is any prediction if "B".

[Polyphen2_HDIV_pred_all]
index=29
type=VARCHAR(255) NULL
adj=Nullify('.')
comment=Polyphen2 prediction based on HumDiv, "D" ("probably damaging"), "P" ("possibly damaging") and "B" ("benign").
	Multiple entries separated by ";". Because the availability of multiple values, use field Polyphen2_HDIV_pred = 'D'
	to locate possibly damaging variants.

[Polyphen2_HVAR_score]
index=30
type=FLOAT NULL
adj=lambda x: None if x.strip() == '.' else max([float(z) for z in x.split(';')])
comment=The maximum (most damaging) value of all Polyphen2 score based on HumVar, i.e. hvar_prob.
	Use Polyphen2_HVAR_score_all to get a list of all scores.

[Polyphen2_HVAR_score_all]
index=30
type=VARCHAR(255) NULL
adj=Nullify('.')
comment=Polyphen2 scores based on HumVar, i.e. hvar_prob. The score ranges from 0 to 1, and the corresponding prediction is
	"probably damaging" if it is in [0.909,1]; "possibly damaging" if it is in [0.447,0.908]; "benign" if it is in [0,0.446].
	Score cutoff for binary classification is 0.5, i.e. the prediction is "neutral" if the score is smaller than 0.5 and "deleterious"
	if the score is larger than 0.5. Multiple entries separated by ";".

[Polyphen2_HVAR_rankscore]
index=31
type=VARCHAR(255) NULL
adj=Nullify('.')
comment=Polyphen2 HVAR scores were first ranked among all HVAR scores
		in dbNSFP. The rankscore is the ratio of the rank the score over the total number of
		the scores in dbNSFP. If there are multiple scores, only the most damaging (largest)
		rankscore is presented. The scores range from 0.01281 to 0.9711.

[Polyphen2_HVAR_pred]
index=32
type=VARCHAR(1) NULL
adj=lambda x: None if x.strip() == '.' else ('D' if 'D' in x else ('P' if 'P' in x else ('B' if 'B' in x else '.')))
comment="D" if any of the predictions in Polyphen2_HVAR_pred_all is "D". Otherwise it can be "P" is any
       prediction is "P", or "B" is any prediction if "B".

[Polyphen2_HVAR_pred_all]
index=32
type=VARCHAR(255) NULL
adj=Nullify('.')
comment=Polyphen2 prediction based on HumVar, "D" ("porobably damaging",
		HVAR score in [0.909,1] or rankscore in [0.62955,0.9711]), "P" ("possibly damaging",
		HVAR in [0.447,0.908] or rankscore in [0.44359,0.62885]) and "B" ("benign", HVAR
		score in [0,0.446] or rankscore in [0.01281,0.44315]). Score cutoff for binary
		classification is 0.5 for HVAR score or 0.45998 for rankscore, i.e. the prediction
		is "neutral" if the HVAR score is smaller than 0.5 (rankscore is smaller than
		0.45998), and "deleterious" if the HVAR score is larger than 0.5 (rankscore is larger
		than 0.45998). Multiple entries are separated by ";".

[LRT_score]
index=33
type=FLOAT NULL
adj=Nullify('.')
comment=The original LRT two-sided p-value (LRTori).

[LRT_converted_rankscore]
index=34
type=FLOAT NULL
adj=Nullify('.')
comment= LRTori scores were first converted as LRTnew=1-LRTori*0.5 if
		Omega<1, or LRTnew=LRTori*0.5 if Omega>=1. Then LRTnew scores were ranked among all
		LRTnew scores in dbNSFP. The rankscore is the ratio of the rank over the total number
		of the scores in dbNSFP. The scores range from 0.00166 to 0.85682.

[LRT_pred]
index=35
type=CHAR(1) NULL
adj=Nullify('.')
comment=LRT prediction, D(eleterious), N(eutral) or U(nknown)

[MutationTaster_score]
index=36
type=FLOAT NULL
adj=Nullify('.')
comment=MutationTaster score

[MutationTaster_converted_rankscore]
index=37
type=FLOAT NULL
adj=Nullify('.')
comment=The MTori scores were first converted: if the prediction
		is "A" or "D" MTnew=MTori; if the prediction is "N" or "P", MTnew=1-MTori. Then MTnew
		scores were ranked among all MTnew scores in dbNSFP. The rankscore is the ratio of the
		rank of the score over the total number of MTnew scores in dbNSFP. The scores range
		from 0.0931 to 0.80722.

[MutationTaster_pred]
index=38
type=CHAR(1) NULL
adj=Nullify('.')
comment= MutationTaster prediction, "A" ("disease_causing_automatic"),
		"D" ("disease_causing"), "N" ("polymorphism") or "P" ("polymorphism_automatic"). The
		score cutoff between "D" and "N" is 0.5 for MTori and 0.328 for the rankscore.

[MutationAssessor_score]
index=39
type=FLOAT NULL
adj=Nullify('.')
comment=MutationAssessor functional impact combined score (MAori). The
		score ranges from -5.545 to 5.975 in dbNSFP. Please refer to Reva et al. (2011)
		Nucl. Acids Res. 39(17):e118 for details.

[MutationAssessor_rankscore]
index=40
type=FLOAT NULL
adj=Nullify('.')
comment=MAori scores were ranked among all MAori scores in dbNSFP.
		The rankscore is the ratio of the rank of the score over the total number of MAori
		scores in dbNSFP. The scores range from 0 to 1.

[MutationAssessor_pred]
index=41
type=CHAR(16) NULL
adj=Nullify('.')
comment=MutationAssessor's functional impact of a variant :
		predicted functional, i.e. high ("H") or medium ("M"), or predicted non-functional,
		i.e. low ("L") or neutral ("N"). The MAori score cutoffs between "H" and "M",
		"M" and "L", and "L" and "N", are 3.5, 1.9 and 0.8, respectively. The rankscore cutoffs
		between "H" and "M", "M" and "L", and "L" and "N", are 0.9416, 0.61387 and 0.26162,
		respectively.

[FATHMM_score]
index=42
type=FLOAT NULL
adj=lambda x: None if x.strip() == '.' else min([float(z) for z in x.split(';')])
comment=Mimimal (more damaging) scores of the multiple scores reported by FATHMM_score_all

[FATHMM_score_all]
index=42
type=VARCHAR(255) NULL
adj=Nullify('.')
comment=FATHMM default score (weighted for human inherited-disease mutations with
		Disease Ontology) (FATHMMori). Scores range from -18.09 to 11.0. Multiple scores
		separated by ";" Please refer to Shihab et al. (2013) Human Mutation 34(1):57-65 for
		details.

[FATHMM_rankscore]
index=43
type=FLOAT NULL
adj=Nullify('.')
comment=FATHMMori scores were ranked among all FATHMMori scores in dbNSFP.
		The rankscore is the ratio of the rank of the score over the total number of FATHMMori
		scores in dbNSFP. If there are multiple scores, only the most damaging (largest)
		rankscore is presented. The scores range from 0 to 1.


[FATHMM_pred]
index=44
type=CHAR(16) NULL
adj=lambda x: None if x.strip() == '.' else ('D' if 'D' in x else ('T' if 'T' in x else '.'))
comment="D" is any of the prediction of FATHMM_pred_all is "D"

[FATHMM_pred_all]
index=44
type=CHAR(16) NULL
adj=Nullify('.')
comment= If a FATHMMori score is <=-1.5 (or rankscore <=0.81415) the corresponding NS
		is predicted as "D(AMAGING)"; otherwise it is predicted as "T(OLERATED)".
		Multiple predictions separated by ";"

[RadialSVM_score]
index=45
type=FLOAT NULL
adj=Nullify('.')
comment=Our support vector machine (SVM) based ensemble prediction score, which
	incorporated 10 scores (SIFT, PolyPhen-2 HDIV, PolyPhen-2 HVAR, GERP++, MutationTaster,
	Mutation Assessor, FATHMM, LRT, SiPhy, PhyloP) and the maximum frequency observed in
	the 1000 genomes populations. Larger value means the SNV is more likely to be damaging.
	The threshold seperationg "T(olerated)" and "D(amaging)" is 0.

[RadialSVM_rankscore]
index=46
type=FLOAT NULL
adj=Nullify('.')
comment= RadialSVM scores were ranked among all RadialSVM scores in dbNSFP.
		The rankscore is the ratio of the rank of the screo over the total number of RadialSVM
		scores in dbNSFP. The scores range from 0 to 1.

[RadialSVM_pred]
index=47
type=VARCHAR(20)
adj=Nullify('.')
comment=Prediction of our SVM based ensemble prediction score,"T(olerated)" or
		"D(amaging)". The score cutoff between "D" and "T" is 0. The rankscore cutoff between
		"D" and "T" is 0.83357.

[LR_score]
index=48
type=FLOAT NULL
adj=Nullify('.')
comment=Our logistic regression (LR) based ensemble prediction score, which
	incorporated 10 scores (SIFT, PolyPhen-2 HDIV, PolyPhen-2 HVAR, GERP++, MutationTaster,
	Mutation Assessor, FATHMM, LRT, SiPhy, PhyloP) and the maximum frequency observed in
	the 1000 genomes populations. Larger value means the SNV is more likely to be damaging.
	The threshold seperationg "T(olerated)" and "D(amaging)" is 0.5.

[LR_rankscore]
index=49
type=FLOAT NULL
adj=Nullify('.')
comment=LR scores were ranked among all LR scores in dbNSFP. The rankscore is the
		ratio of the rank of the score over the total number of LR scores in dbNSFP. The scores
		range from 0 to 1.

[LR_pred]
index=50
type=VARCHAR(20)
adj=Nullify('.')
comment=Prediction of our LR based ensemble prediction score,"T(olerated)" or "D(amaging)".

[Reliability_index]
index=51
type=FLOAT NULL
adj=Nullify('.')
comment=Number of observed component scores (except the maximum frequency in
	the 1000 genomes populations) for RadialSVM and LR. Ranges from 1 to 10. As RadialSVM
	and LR scores are calculated based on imputed data, the less missing component scores,
	the higher the reliability of the scores and predictions.

[CADD_raw]
index=52
type=FLOAT NULL
adj=Nullify('.')
comment=: CADD raw score for funtional prediction of a SNP. Please refer to Kircher et al.
		(2014) Nature Genetics 46(3):310-5 for details. The larger the score the more likely
		the SNP has damaging effect.

[CADD_raw_rankscore]
index=53
type=FLOAT NULL
adj=Nullify('.')
comment=CADD raw scores were ranked among all CADD raw scores in dbNSFP. The
		rankscore is the ratio of the rank of the score over the total number of CADD
		raw scores in dbNSFP.

[CADD_phred]
index=54
type=FLOAT NULL
adj=Nullify('.')
comment=CADD phred-scaled score


[GERP_NR]
index=55
type=FLOAT NULL
adj=Nullify('.')
comment=GERP++ neutral rate

[GERP_RS]
index=56
type=FLOAT NULL
adj=Nullify('.')
comment=GERP++ RS score, the larger the score, the more conserved the site.


[GERP_RS_rankscore]
index=57
type=FLOAT NULL
adj=Nullify('.')
comment=GERP++ RS scores were ranked among all GERP++ RS scores in dbNSFP.
		The rankscore is the ratio of the rank of the score over the total number of GERP++ RS
		scores in dbNSFP.

[phyloP46way_primate]
index=58
type=FLOAT NULL
adj=Nullify('.')
comment=phyloP (phylogenetic p-values) conservation score based on the
		multiple alignments of 10 primate genomes (including human). The larger the score,
		the more conserved the site.

[phyloP46way_primate_rankscore]
index=59
type=FLOAT NULL
adj=Nullify('.')
comment=phyloP46way_primate scores were ranked among all
		phyloP46way_primate scores in dbNSFP. The rankscore is the ratio of the rank of the
		score over the total number of phyloP46way_primate scores in dbNSFP.

[phyloP46way_placental]
index=60
type=FLOAT NULL
adj=Nullify('.')
comment=phyloP (phylogenetic p-values) conservation score based on the
		multiple alignments of 33 placental mammal genomes (including human). The larger the
		score, the more conserved the site.

[phyloP46way_placental_rankscore]
index=61
type=FLOAT NULL
adj=Nullify('.')
comment=phyloP46way_placental scores were ranked among all
		phyloP46way_placental scores in dbNSFP. The rankscore is the ratio of the rank of the
		score over the total number of phyloP46way_placental scores in dbNSFP.

[phyloP100way_vertebrate]
index=62
type=FLOAT NULL
adj=Nullify('.')
comment=phyloP (phylogenetic p-values) conservation score based on the
		multiple alignments of 100 vertebrate genomes (including human). The larger the score,
		the more conserved the site.

[phyloP100way_vertebrate_rankscore]
index=63
type=FLOAT NULL
adj=Nullify('.')
comment=phyloP100way_vertebrate scores were ranked among all
		phyloP100way_vertebrate scores in dbNSFP. The rankscore is the ratio of the rank of the
		score over the total number of phyloP100way_vertebrate scores in dbNSFP.

[phastCons46way_primate]
index=64
type=FLOAT NULL
adj=Nullify('.')
comment=phastCons conservation score based on the multiple alignments of
		10 primate genomes (including human). The larger the score, the more conserved the site.

[phastCons46way_primate_rankscore]
index=65
type=FLOAT NULL
adj=Nullify('.')
comment=phastCons46way_primate scores were ranked among all
		phastCons46way_primate scores in dbNSFP. The rankscore is the ratio of the rank of the
		score over the total number of phastCons46way_primate scores in dbNSFP.

[phastCons46way_placental]
index=66
type=FLOAT NULL
adj=Nullify('.')
comment=phastCons conservation score based on the multiple alignments of
		33 placental mammal genomes (including human). The larger the score, the more conserved
		the site.

[phastCons46way_placental_rankscore]
index=67
type=FLOAT NULL
adj=Nullify('.')
comment=phastCons46way_placental scores were ranked among all
		phastCons46way_placental scores in dbNSFP. The rankscore is the ratio of the rank of the
		score over the total number of phastCons46way_placental scores in dbNSFP.

[phastCons100way_vertebrate]
index=68
type=FLOAT NULL
adj=Nullify('.')
comment=phastCons conservation score based on the multiple alignments
		of 100 vertebrate genomes (including human). The larger the score, the more conserved
		the site.

[phastCons100way_vertebrate_rankscore]
index=69
type=FLOAT NULL
adj=Nullify('.')
comment=phastCons100way_vertebrate scores were ranked among
		all phastCons100way_vertebrate scores in dbNSFP. The rankscore is the ratio of the rank
		of the score over the total number of phastCons100way_vertebrate scores in dbNSFP.


[SiPhy_29way_pi]
index=70
type=VARCHAR(255) NULL
comment=The estimated stationary distribution of A, C, G and T at the site,
		using SiPhy algorithm based on 29 mammals genomes.

[SiPhy_29way_logOdds]
index=71
type=FLOAT NULL
adj=Nullify('.')
comment=SiPhy score based on 29 mammals genomes. The larger the score,
		the more conserved the site.

[SiPhy_29way_logOdds_rankscore]
index=72
type=FLOAT NULL
adj=Nullify('.')
comment=SiPhy_29way_logOdds scores were ranked among all
		SiPhy_29way_logOdds scores in dbNSFP. The rankscore is the ratio of the rank
		of the score over the total number of SiPhy_29way_logOdds scores in dbNSFP.

[LRT_Omega]
index=73
type=FLOAT NULL
adj=Nullify('.')
comment=estimated nonsynonymous-to-synonymous-rate ratio (reported by LRT)

[UniSNP_ids]
index=74
type=CHAR(64) NULL
adj=Nullify('.')
comment="rs numbers from UniSNP, which is a cleaned version of dbSNP build 129, in format: rs number1;rs number2;..."

[KGp1_AC]
index=75
type=INTEGER NULL
adj=Nullify('.')
comment=Alternative allele count in the whole 1000Gp1 data.

[KGp1_AF]
index=76
type=FLOAT NULL
adj=Nullify('.')
comment=Alternative allele frequency in the whole 1000Gp1 data.

[KGp1_AFR_AC]
index=77
type=INTEGER NULL
adj=Nullify('.')
comment=Alternative allele counts in the 1000Gp1 African descendent samples.

[KGp1_AFR_AF]
index=78
type=FLOAT NULL
adj=Nullify('.')
comment=Alternative allele frequency in the 1000Gp1 African descendent samples.

[KGp1_EUR_AC]
index=79
type=INTEGER NULL
adj=Nullify('.')
comment=Alternative allele counts in the 1000Gp1 European descendent samples.

[KGp1_EUR_AF]
index=80
type=FLOAT NULL
adj=Nullify('.')
comment=Alternative allele frequency in the 1000Gp1 European descendent samples.

[KGp1_AMR_AC]
index=81
type=INTEGER NULL
adj=Nullify('.')
comment=Alternative allele counts in the 1000Gp1 American descendent samples.

[KGp1_AMR_AF]
index=82
type=FLOAT NULL
adj=Nullify('.')
comment=Alternative allele frequency in the 1000Gp1 American descendent samples.

[KGp1_ASN_AC]
index=83
type=INTEGER NULL
adj=Nullify('.')
comment=Alternative allele counts in the 1000Gp1 Asian descendent samples.

[KGp1_ASN_AF]
index=84
type=FLOAT NULL
adj=Nullify('.')
comment=Alternative allele frequency in the 1000Gp1 Asian descendent samples.

[ESP6500_AA_AF]
index=85
type=FLOAT NULL
adj=Nullify('.')
comment=Alternative allele frequency in the Afrian American samples of the NHLBI GO Exome Sequencing Project (ESP6500 data set).

[ESP6500_EA_AF]
index=86
type=FLOAT NULL
adj=Nullify('.')
comment=Alternative allele frequency in the European American samples of the NHLBI GO Exome Sequencing Project (ESP6500 data set).