Department of Bioinformatics and Computational Biology

Publications Supplements Data

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Publications, Supplements and Data Sets

Here you can find an extensive list of articles published by our faculty members, along with Supplementary materials such as tables, datasets and source code. You can sort the table by clicking on the column headers.

There are 595 articles. Download the entire list in BibTeX or EndNote format.

Year Article Supplementary Material
2015 Li et al. TANRIC: An interactive open platform to explore the function of lncRNAs in cancer.
Cancer Res. , Jul 2015     BibTeX EndNote    URL
2013 Yoshihara et al. Inferring tumour purity and stromal and immune cell admixture from expression data.
Nat Commun 4:2612, 2013    Abstract   BibTeX EndNote    URL
2013 Yang et al. Predicting time to ovarian carcinoma recurrence using protein markers.
J. Clin. Invest. 123(9):3740-50, Sep 2013    Abstract   BibTeX EndNote    URL
2013 Li et al. TCPA: a resource for cancer functional proteomics data.
Nat. Methods 10(11):1046-7, Nov 2013     BibTeX EndNote    URL
2012 Chen et al. BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data.
Bioinformatics 28(14):1923-4, Jul 2012    Abstract   BibTeX EndNote    URL
2012 Caudle et al. American College of Surgeons Oncology Group (ACOSOG) Z0011: Impact on Surgeon Practice Patterns.
Ann Surg Oncol , Jul 2012    Abstract   BibTeX EndNote    URL
2012 Zong et al. The cellular origin for malignant glioma and prospects for clinical advancements.
Expert Rev. Mol. Diagn. 12(4):383-94, May 2012    Abstract   BibTeX EndNote    URL
2012 Kamal et al. REST regulates oncogenic properties of glioblastoma stem cells.
Stem Cells 30(3):405-14, Mar 2012    Abstract   BibTeX EndNote    URL
2012 Kühn et al. High-resolution genomic profiling of adult and pediatric core-binding factor acute myeloid leukemia reveals new recurrent genomic alterations.
Blood 119(10):e67-75, Mar 2012    Abstract   BibTeX EndNote    URL
2012 He et al. Aberrant expression of proteins involved in signal transduction and DNA repair pathways in lung cancer and their association with clinical parameters.
PLoS ONE 7(2):e31087, 2012    Abstract   BibTeX EndNote    URL
2012 N/A Comprehensive molecular portraits of human breast tumours.
Nature 490(7,418):61-70, Oct 2012    Abstract   BibTeX EndNote    URL
2012 Ding et al. Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing.
Nature 481(7,382):506-10, Jan 2012    Abstract   BibTeX EndNote    URL
2012 Caudle et al. Local-regional control according to surrogate markers of breast cancer subtypes and response to neoadjuvant chemotherapy in breast cancer patients undergoing breast conserving therapy.
Breast Cancer Res 14(3):R83, May 2012    Abstract   BibTeX EndNote    URL
2012 Zheng et al. Studying a complex tumor: potential and pitfalls.
Cancer J 18(1):107-14, Jan-Feb 2012    Abstract   BibTeX EndNote    URL
2012 James et al. Functional characterization of CLPTM1L as a lung cancer risk candidate gene in the 5p15.33 locus.
PLoS ONE 7(6):e36116, 2012    Abstract   BibTeX EndNote    URL
2012 Ryan et al. SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts.
Bioinformatics 28(18):2385-7, Sep 2012    Abstract   BibTeX EndNote    URL
Supplementary Material
2012 Tucker et al. Incorporating Single-nucleotide Polymorphisms Into the Lyman Model to Improve Prediction of Radiation Pneumonitis.
Int J Radiat Oncol Biol Phys , Apr 2012    Abstract   BibTeX EndNote    URL
2012 Manyam et al. Relax with CouchDB--into the non-relational DBMS era of bioinformatics.
Genomics 100(1):1-7, Jul 2012    Abstract   BibTeX EndNote    URL
2012 Zeng et al. Targeting of mTORC1/2 by the mTOR kinase inhibitor PP242 induces apoptosis in AML under conditions mimicking the bone marrow microenvironment.
Blood , Aug 2012    Abstract   BibTeX EndNote    URL
2012 Vinogradskiy et al. A novel method to incorporate the spatial location of the lung dose distribution into predictive radiation pneumonitis modeling.
Int. J. Radiat. Oncol. Biol. Phys. 82(4):1549-55, Mar 2012    Abstract   BibTeX EndNote    URL

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