Software and Services in Development

Here is a list of software and services currently under development by the Department of Bioinformatics and Computational Biology. They are copyrighted by the University of Texas MD Anderson Cancer Center and by the individual employees of the cancer center who helped develop them. They are freely available for personal use in research projects; however, anyone wishing to use them or modify them for use in a commercial project should contact the Office of Technology Commercialization.

• CanDrA

CanDrA is a machine learning program which predicts cancer type specific driver mutations based on 95 structural and evolutionary features computed by over 10 other functional prediction algorithms.

• Pinnacle 2DGE Spot Detection and Quantification

Standalone gui to perform spot detection and quantification for registered 2D gel electrophoresis images using Pinnacle of Morris, et al. (2008).

• LNCINOFF

lncRNA functional inference based on off-target effect.