Department of Bioinformatics and Computational Biology

SurvNet:Overview

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SurvNet

Logo
SurvNet
Overview
Description A bioinformatics web app for identifying network-based biomarkers that most correlate with patient survival data. Click the link below to use SurvNet.
URL http://bioinformatics.mdanderson.org/survnet/
Development Information
Language Perl CGI, R and C++
Current Version 3.0.2
License Not required
Status active
Last Updated 2015-06-11
References
Citations Li J, Roebuck P, Grünewald S, Liang H. (2012).
SurvNet: a web server for identifying network-based biomarkers that most correlate with patient survival data.
Nucleic Acids Research 40:W1 W123-6.
doi:10.1093/nar/gks386
News Published Apr 14th in Nucleic Acids Research.
Help and Support
Contact Han Liang[1]


SurvNet is a valuable bioinformatic tool for identifying network-based biomarkers that most correlate with patient survival data. SurvNet takes three input files: one biological network file as the searching platform (several human protein interaction networks are provided as choices), one molecular profiling file (e.g., array-based gene expression or DNA methylation data or mutation data), and one patient survival data file. Given user-defined parameters, SurvNet will automatically identify sub-networks that most correlate with patient survival data and display the results in a visually appealing manner. Preloaded TCGA data is also available for analysis.

Contents


Browser Requirements

SurvNet is compatible with all major browsers, including Internet Explorer, Firefox, Safari, and Chrome. Javascript must be enabled by the browser. Adobe Flash Player is required to use the Cytoscape Web visualization tool.

Usage

Login is not required — it is free for anyone to use.

Release History

  • Version 3.0.2 was released on 2015-06-11.
  • Version 3.0.1 was released on 2015-01-07.
  • Version 3.0.0 was released on 2014-11-05.
  • Version 2.6.0 was released on 2014-09-13.
  • Version 2.4.0 was released on 2014-04-09.
  • Version 2.2.0 was released on 2013-03-12.
  • Version 2.0.2 was released on 2013-07-25.
  • Version 2.0.1 was released on 2013-03-12.
  • Version 2.0.0 was released on 2012-12-20.
  • Version 1.4.0 was released on 2012-04-10.
  • Version 1.3.0 was released on 2012-03-02.
  • Version 1.2.0 was released on 2012-02-03.
  • Version 1.0.0 was released on 2011-12-15.
  • Initially completed on 2011-08-15.

Support

For questions or support related to the use of SurvNet, please visit on the project's forum page.
For other inquiries, please contact Dr. Han Liang.

Disclaimer

This website is for educational and research purposes only.