This project is archived and no longer maintained.
|Description||BREPA: Breakpoint Resolution via Pairwise Alignment|
|Help and Support|
BREPA is a tool to accurately infer structural varation types, nucleotide resolution breakpoints, local context of breakpoints (microhomology, micro-insertion) given a contig/long read covering the breakpoint. It aligns the contig/long read to the reference by BWA-MEM and interpret the alignment results.
The source code of BREPA and example test data are freely available at https://bitbucket.org/xianfan/brepa