### Department of Bioinformatics and Computational Biology

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Example Software Project

 hidden row for table layout Overview Description To change information in this box, edit the ‘front matter’ in the software’s markdown page. Development Information GitHub MD-Anderson-Bioinformatics/MBatch Language R Current version 1.4.17 Platforms All platforms Status Active Last updated 11/06/2018 References Citation Submitted to Nature Methods Rohrdanz, M. A., Zheng, W., Hoff, W., Lambeth, B., Vreede, J., and Clementi, C., “Multiscale Approach to the Determination of Photoactive Yellow Protein Signalling State Ensemble”, PLOS Computational Biology, (2014) https://doi.org/10.1371/journal.pcbi.1003797  Rohrdanz, M. A., Herbert, J. H., “Simultaneous benchmarking of ground- and excited-state properties with long-range-corrected density functional theory”, J. Chem. Phys. 129, 034107 (2008) Help and Support Contact Tod Casasent  Chris Wakefield

## Example Software Project

This is an example software project to show how to use the theme. This page was generated from the file: content/public-software/example.md, and will NOT be part of the actual web site.

The information in the box to the right comes from the 'front matter' in this file. This is were information like the GitHub URL, language, citation, and contact information can be placed. For reference, the front matter for this page is shown below. This front matter is in YAML format, starting and ending with three hyphens ‘—’. Entries may be left blank (e.g. ‘url’, ‘license’, and ‘news’ below).

For all but two of the keys, the value is simple text. The two keys that different are citation and contact:

• For the citation entry, the value can be either a list or a string.
• If a list: first entry is the text to display (say, the paper’s title), and the second entry is a URL. (As demonstrated on the current page).
• If text: that text will be displayed with no link (As demonstrated on the DyCE page).
• For the contact entry, the value must be a list. The first entry is the contact person’s name; the second entry is their email address.

Here is a shortcode for a button. You can change the colors via parameters within the shortcode.

Front Matter for Example Software Project

—
title: "Example Software Project"
date: 2018-11-11
draft: false

description: "To change information in this box, edit the 'front matter' in the software's markdown page."
href:
language: R
current-version: 1.4.17
platforms: All platforms
—