|Description||R package and RShiny application to calculate tumor-immune interaction scores based on mRNA expression profiles.|
|Citation||Bozorgui, B., Kong, E.K., Luna, A., and Korkut, A. (2021) Mapping the Functional Interactions at the Tumor-Immune Checkpoint Interface. http://dx.doi.org/10.1101/2021.10.06.462889|
|Help and Support|
|Discussion||Issues On GitHub|
Immuno-oncology gene interaction maps, imogimap, is an R-based statistical analysis framework. Imogimap generates catalogues of maps that quantify the interactions at the tumor-immune interface. The goal of imogimap is to calculate tumor-immune interactions scores based on mRNA expression profiles of multi-sample data and rigorous statistical evaluation. The method quantifies combinatorial effects of tumor intrinsic onco-genic pathways and immune checkpoints on immune related phenotype in tumor micro-environment.
You can use imogimap’s Rshiny interactive web app directly following “our public domain”. To run locallym you can install our R library from GitHub with:
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