MBatch Omic Browser v4.0.0

Acknowledgements

The MBatch Omic Browser would not be possible without the data resources of The Metabolomics Workbench and the Genomic Data Commons (GDC). Our deepest thanks to both organizations for the collaboration with us over the years.

Using MBatch Omic Browser

To view an analysis, click the "View Analysis" link under the View Results column or use the Previous or Next buttons at the top of the page.

To download data, click the "Data" link under the Data Download column or use the Data button in Data Viewer.

To download results for use with the standalone viewer, click the "Results" link under the Results Download column or use the Results button in Data Viewer.

To bookmark a URL for a search and diagram, click the "Copy URL" button at the top of the page. Paste the URL and bookmark that URL.

Details about Batch Effects and Various GUI Components

Batch Effects Overview and Interpretation Link to BCB website concerning Batch Effects analysis and interpretation and how to use the GUI.

GDC Converters Documentation of conversion/standardization of GDC data. (New Tab.)

Software and BCB at MDA

GitHub Link to public software release for MBatch Omic Browser. Includes docker compose files for using Docker Hub images.

About BCB at MD Anderson Link to the Bioinformatics and Computations Biology website at UT MD Anderson Cancer Center.

Principal Investigators

• Rehan Akbani
• Bradley M. Broom
• John N. Weinstein

Developers

• Principal developer: Tod D. Casasent
• Chris Wakefield
• Mary A. Rohrdanz
• Jun Ma
• James Melott
• Michael Ryan (In-Silico Solutions)
• Mark Stucky (In-Silico Solutions)

Trainees

• Shwetha V. Kumar
• Huma Shehwana

Funding

• U.S. National Cancer Institute (NCI) grant: Akbani, Weinstein, Broom. A Genome Data Analysis Center Focused on Batch Effect Analysis and Data Integration, U24CA264006
• U.S. National Cancer Institute (NCI) grant: Weinstein, Mills, Akbani. Batch effects in molecular profiling data on cancers: detection, quantification, interpretation, and correction, U24CA210949
• U.S. National Cancer Institute (NCI) grant: Weinstein, Broom. "Next Generation" Clustered Heat Maps for Fluent, Interactive Exploration of Omic Data, U24CA199461
• U.S. National Cancer Institute (NCI) grant: Weinstein, Mills, Akbani. Integrative Pipeline for Analysis & Translational Application of TCGA Data (GDAC), U24CA143883
• The Michael & Susan Dell Foundation
• The H.A. and Mary K. Chapman Foundation