Analysis of Microarray Data: Lecture Notes
GS01 0163, Fall 2004
List of lectures
- Lecture 1, 31 August 2004.
- Introduction to Microarrays.
- Lecture 2, 2 September 2004.
- The Structure of Microarrays.
- Lecture 3, 7 September 2004.
- Quantifying cDNA Microarrays.
- Lecture 4, 9 September 2004.
- Quantifying Affymetrix Microarrays.
- Lecture 5, 14 September 2004.
- BioConductor and Affymetrix Arrays.
- Lecture 6, 16 September 2004.
- R and Glass Microarrays.
- Lecture 7, 21 September 2004.
- Normalization and Affymetrix.
- Lecture 8, 23 September 2004.
- Normalization, Affy, R, and Glass.
- Lecture 9, 28 September 2004.
- Differential Expression.
- Lecture 10, 30 September 2004.
- Rank-based tests of differential expression.
- Lecture 11, 5 October 2004.
- Differential expression and modelling.
- Lecture 12, 7 October 2004.
- Differential expression and borrowing.
- Lecture 13, 12 October 2004.
- Biological interpretation.
- 14 October 2004
- Class cancelled.
- Lecture 14, 19 October 2004.
- Biology: Functions and Networks.
- Lecture 15, 21 October 2004.
- Regulatory Networks.
- Lecture 16, 26 October 2004.
- Designing Microarray Experiments.
- Lecture 17, 28 October 2004.
- Clustering Microarray Data I.
- Lecture 18, 2 November 2004.
- Clusters, Partitions, and Silhouettes.
- Lecture 19, 4 November 2004.
- Applied Clustering.
- Lecture 20, 9 November 2004.
- Classification I.
- Lecture 21, 11 November 2004.
- Classification II.
- Lecture 22, 16 November 2004.
- Predicting clinical outcome.
- Lecture 23, 23 November 2004.
- Meta-analysis.
- Lecture 24, 30 November 2004.
- Meta-analysis of CLL Studies.
- Lecture 25, 7 December 2004.
- Time Course Studies
- Lecture 26, 9 December 2004.
- Open Questions
- Lecture 26 Bonus, 9 December 2004.
- Analysis of Proteomic Spectra