This page is an overview of serchable data in the tcga_mirna_prad_v2.0_mirna_mirna next-generation clustered heat map. The interactive heat map this page describes can be reached at this link tcga_mirna_prad_v2.0_mirna_mirna or on one of the links below such as the Heat Map Name, Map Id, or the thumbnail graphic image or through the The Cancer Genome Atlas (TCGA) Next-Generation Clustered Heat Map (NG-CHM) Compendium viewer.

Heat Map Description

Mirna-mirna comparison of miRNA expression - HiSeq for 138 mirnas in 499 tcga PRAD samples, using the MD Anderson Standardized TCGA Data (version 2016_07_28_1308) with unexpressed genes removed and up to 2000 most highly variable genes added.

General Information

Heat Map Name: tcga_mirna_prad_v2.0_mirna_mirna
Map Id: 1bb229ec44aeee7419fcd14c4ec05a950c177393

Tumor Type: Prostate adenocarcinoma (PRAD)

cBioPortal Study Id: [[cbioportal_study_id]]

Build Date:2017-05-26 14:28:59
Map Version Id:1.1.0

Top Layer Summary View

Next-Generation Clustered Heat Map thumbnail image.  Click to go to full-sized next-generation heat map tcga_mirna_prad_v2.0_mirna_mirna.

Data Layers

Row Information

Number of Rows:138
Row Type:bio.mirna

Order Method:Hierarchical
Agglomeration Method:ward.D2
Distance Metric:correlation
Has Dendrogram:Yes
Top Items:No top items

Classification Bars:
No row classification bars

Column Information

Number of Columns:138
Column Type:bio.mirna

Order Method:Hierarchical
Agglomeration Method:ward.D2
Distance Metric:correlation
Has Dendrogram:Yes
Top Items:No top items

Classification Bars:
No column classification bars

Matrix Data Items

Row Labels:

Column Labels:

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