This page is an overview of serchable data in the tcga_rnaseqv2_brca_v2.0_gene_sample next-generation clustered heat map. The interactive heat map this page describes can be reached at this link tcga_rnaseqv2_brca_v2.0_gene_sample or on one of the links below such as the Heat Map Name, Map Id, or the thumbnail graphic image or through the The Cancer Genome Atlas (TCGA) Next-Generation Clustered Heat Map (NG-CHM) Compendium viewer.

Heat Map Description

RNA expression - Illumina (HiSeq) for 3515 variable genes in 1102 tcga BRCA samples, using the MD Anderson Standardized TCGA Data (version 2016_07_28_1308) with unexpressed genes removed and up to 2000 most highly variable genes added.

General Information

Heat Map Name: tcga_rnaseqv2_brca_v2.0_gene_sample
Map Id: 77b4bc23fdfd8009e8a634b8252f5ed4bd107327

Tumor Type: Breast invasive carcinoma (BRCA)

cBioPortal Study Id: brca_tcga_pub

Build Date:2017-12-07 11:50:51
Map Version Id:1.1.0

Top Layer Summary View

Next-Generation Clustered Heat Map thumbnail image. Click to go to full-sized next-generation heat map tcga_rnaseqv2_brca_v2.0_gene_sample.

Data Layers

Row Information

Number of Rows:3515
Row Type:bio.gene.hugo, bio.gene.entrezid

Order Method:Hierarchical
Agglomeration Method:ward.D2
Distance Metric:correlation
Has Dendrogram:Yes
Top Items:No top items

Classification Bars:

Column Information

Number of Columns:1102
Column Type:bio.tcga.barcode.sample.vial.portion.analyte.aliquot

Order Method:Hierarchical
Agglomeration Method:ward.D2
Distance Metric:correlation
Has Dendrogram:Yes
Top Items:No top items

Classification Bars:

Matrix Data Items

Row Labels:

Column Labels:

Related Pages

TCGA Heat Map Compendium Description Index Page
TCGA Heat Map Compendium
NG-CHM Viewer Software Documentation
NG-CHM Web Builder
NG-CHM Blog
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