This page is an overview of serchable data in the tcga_rnaseqv2_hnsc_v2.0_gene_sample next-generation clustered heat map. The interactive heat map this page describes can be reached at this link tcga_rnaseqv2_hnsc_v2.0_gene_sample or on one of the links below such as the Heat Map Name, Map Id, or the thumbnail graphic image or through the The Cancer Genome Atlas (TCGA) Next-Generation Clustered Heat Map (NG-CHM) Compendium viewer.

Heat Map Description

RNA expression - Illumina (HiSeq) for 3536 variable genes in 522 tcga HNSC samples, using the MD Anderson Standardized TCGA Data (version 2016_01_20_1306) with unexpressed genes removed and up to 2000 most highly variable genes added.

General Information

Heat Map Name: tcga_rnaseqv2_hnsc_v2.0_gene_sample
Map Id: cf478ba7f33f8412ac433c0eb07c360e2abc1b15

Tumor Type: Head and Neck squamous cell carcinoma (HNSC)

cBioPortal Study Id: [[cbioportal_study_id]]

Build Date:2016-11-13 13:19:45
Map Version Id:1.1.0

Top Layer Summary View

Next-Generation Clustered Heat Map thumbnail image. Click to go to full-sized next-generation heat map tcga_rnaseqv2_hnsc_v2.0_gene_sample.

Data Layers

Row Information

Number of Rows:3536
Row Type:bio.gene.hugo.bar.bio.gene.entrezid

Order Method:Hierarchical
Agglomeration Method:ward.D2
Distance Metric:correlation
Has Dendrogram:Yes
Top Items:No top items

Classification Bars:

Column Information

Number of Columns:522
Column Type:bio.tcga.barcode.sample.vial.portion.analyte.aliquot

Order Method:Hierarchical
Agglomeration Method:ward.D2
Distance Metric:correlation
Has Dendrogram:Yes
Top Items:No top items

Classification Bars:

Matrix Data Items

Row Labels:

Column Labels:

Related Pages

TCGA Heat Map Compendium Description Index Page
TCGA Heat Map Compendium
NG-CHM Viewer Software Documentation
NG-CHM Web Builder
NG-CHM Blog
NG-CHM Twitter Page
NG-CHM Facebook Page