This page is an overview of serchable data in the tcga_rnaseqv2_kirc_v2.0_gene_gene next-generation clustered heat map. The interactive heat map this page describes can be reached at this link tcga_rnaseqv2_kirc_v2.0_gene_gene or on one of the links below such as the Heat Map Name, Map Id, or the thumbnail graphic image or through the The Cancer Genome Atlas (TCGA) Next-Generation Clustered Heat Map (NG-CHM) Compendium viewer.

Heat Map Description

Gene-gene comparison of RNA expression - Illumina (HiSeq) for 3538 genes in 534 tcga KIRC samples, using the MD Anderson Standardized TCGA Data (version 2016_01_20_1306) with unexpressed genes removed and up to 2000 most highly variable genes added.

General Information

Heat Map Name: tcga_rnaseqv2_kirc_v2.0_gene_gene
Map Id: d3e90e9174221edeb6f9b278f27d712920432436

Tumor Type: Kidney renal clear cell carcinoma (KIRC)

cBioPortal Study Id: kirc_tcga

Build Date:2017-01-30 12:58:19
Map Version Id:1.1.0

Top Layer Summary View

Next-Generation Clustered Heat Map thumbnail image. Click to go to full-sized next-generation heat map tcga_rnaseqv2_kirc_v2.0_gene_gene.

Data Layers

Row Information

Number of Rows:3538
Row Type:bio.gene.hugo.bar.bio.gene.entrezid

Order Method:Hierarchical
Agglomeration Method:ward.D2
Distance Metric:correlation
Has Dendrogram:Yes
Top Items:No top items

Classification Bars:

Column Information

Number of Columns:3538
Column Type:bio.gene.hugo.bar.bio.gene.entrezid

Order Method:Hierarchical
Agglomeration Method:ward.D2
Distance Metric:correlation
Has Dendrogram:Yes
Top Items:No top items

Classification Bars:

Matrix Data Items

Row Labels:

Column Labels:

Related Pages

TCGA Heat Map Compendium Description Index Page
TCGA Heat Map Compendium
NG-CHM Viewer Software Documentation
NG-CHM Web Builder
NG-CHM Blog
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