This page is an overview of serchable data in the tcga_rppa_lihc_v2.0_protein_sample next-generation clustered heat map. The interactive heat map this page describes can be reached at this link tcga_rppa_lihc_v2.0_protein_sample or on one of the links below such as the Heat Map Name, Map Id, or the thumbnail graphic image or through the The Cancer Genome Atlas (TCGA) Next-Generation Clustered Heat Map (NG-CHM) Compendium viewer.

Heat Map Description

RPPA for 193 variable proteins in 184 tcga LIHC samples, using the MD Anderson Standardized TCGA Data (version 2016_01_20_1306) with unexpressed genes removed and up to 2000 most highly variable genes added.

General Information

Heat Map Name: tcga_rppa_lihc_v2.0_protein_sample
Map Id: 313d10a140d635e8cab324ca189a01c17aad6e9a

Tumor Type: Liver hepatocellular carcinoma (LIHC)

cBioPortal Study Id: [[cbioportal_study_id]]

Build Date:2017-04-11 07:00:19
Map Version Id:1.1.0

Top Layer Summary View

Next-Generation Clustered Heat Map thumbnail image. Click to go to full-sized next-generation heat map tcga_rppa_lihc_v2.0_protein_sample.

Data Layers

Row Information

Number of Rows:193
Row Type:bio.rppa.antibody.name.bar.bio.gene.hugo, bio.gene.hugo.list.space

Order Method:Hierarchical
Agglomeration Method:ward.D2
Distance Metric:correlation
Has Dendrogram:Yes
Top Items:No top items

Classification Bars:

Column Information

Number of Columns:184
Column Type:bio.tcga.barcode.sample.vial.portion.analyte.aliquot

Order Method:Hierarchical
Agglomeration Method:ward.D2
Distance Metric:correlation
Has Dendrogram:Yes
Top Items:No top items

Classification Bars:

Matrix Data Items

Row Labels:

Column Labels:

Related Pages

TCGA Heat Map Compendium Description Index Page
TCGA Heat Map Compendium
NG-CHM Viewer Software Documentation
NG-CHM Web Builder
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