This page is an overview of serchable data in the tcga_rppa_thym_v2.0_protein_protein next-generation clustered heat map. The interactive heat map this page describes can be reached at this link tcga_rppa_thym_v2.0_protein_protein or on one of the links below such as the Heat Map Name, Map Id, or the thumbnail graphic image or through the The Cancer Genome Atlas (TCGA) Next-Generation Clustered Heat Map (NG-CHM) Compendium viewer.

Heat Map Description

Protein-protein comparison of RPPA for 192 proteins in 90 tcga THYM samples, using the MD Anderson Standardized TCGA Data (version 2016_01_20_1306) with unexpressed genes removed and up to 2000 most highly variable genes added.

General Information

Heat Map Name: tcga_rppa_thym_v2.0_protein_protein
Map Id: 0ef3b35d271eb13472e1ca0e895d9e659947354f

Tumor Type: Thymoma (THYM)

cBioPortal Study Id: [[cbioportal_study_id]]

Build Date:2017-04-11 07:08:28
Map Version Id:1.1.0

Top Layer Summary View

Next-Generation Clustered Heat Map thumbnail image. Click to go to full-sized next-generation heat map tcga_rppa_thym_v2.0_protein_protein.

Data Layers

Row Information

Number of Rows:192
Row Type:bio.rppa.antibody.name.bar.bio.gene.hugo, bio.gene.hugo.list.space

Order Method:Hierarchical
Agglomeration Method:ward.D2
Distance Metric:correlation
Has Dendrogram:Yes
Top Items:No top items

Classification Bars:

Column Information

Number of Columns:192
Column Type:bio.rppa.antibody.name.bar.bio.gene.hugo, bio.gene.hugo.list.space

Order Method:Hierarchical
Agglomeration Method:ward.D2
Distance Metric:correlation
Has Dendrogram:Yes
Top Items:No top items

Classification Bars:

Matrix Data Items

Row Labels:

Column Labels:

Related Pages

TCGA Heat Map Compendium Description Index Page
TCGA Heat Map Compendium
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NG-CHM Web Builder
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