This page is an overview of serchable data in the tcga_rppa_uvm_v2.0_protein_sample next-generation clustered heat map. The interactive heat map this page describes can be reached at this link tcga_rppa_uvm_v2.0_protein_sample or on one of the links below such as the Heat Map Name, Map Id, or the thumbnail graphic image or through the The Cancer Genome Atlas (TCGA) Next-Generation Clustered Heat Map (NG-CHM) Compendium viewer.

Heat Map Description

RPPA for 217 variable proteins in 12 tcga UVM samples, using the 2017 TCGA Pan-Cancer RPPA data.

General Information

Heat Map Name: tcga_rppa_uvm_v2.0_protein_sample
Map Id: 57b6e1bcef269d41dd5abdf79fb4e0944e4293a8

Tumor Type: Uveal Melanoma (UVM)

cBioPortal Study Id: uvm_tcga

Build Date:2017-06-05 08:26:30
Map Version Id:1.1.0

Top Layer Summary View

Next-Generation Clustered Heat Map thumbnail image. Click to go to full-sized next-generation heat map tcga_rppa_uvm_v2.0_protein_sample.

Data Layers

Row Information

Number of Rows:217
Row Type:bio.rppa.antibody.name, bio.gene.hugo:list.space, bio.gene.entrezid:list.space

Order Method:Hierarchical
Agglomeration Method:ward.D2
Distance Metric:correlation
Has Dendrogram:Yes
Top Items:No top items

Classification Bars:

Column Information

Number of Columns:12
Column Type:bio.tcga.barcode.sample.vial.portion.analyte.aliquot

Order Method:Hierarchical
Agglomeration Method:ward.D2
Distance Metric:correlation
Has Dendrogram:Yes
Top Items:No top items

Classification Bars:

Matrix Data Items

Row Labels:

Column Labels:

Related Pages

TCGA Heat Map Compendium Description Index Page
TCGA Heat Map Compendium
NG-CHM Viewer Software Documentation
NG-CHM Web Builder
NG-CHM Blog
NG-CHM Twitter Page
NG-CHM Facebook Page