Run Batch Effects and Ovarian Cancer

This web page contains supporting material for the manuscript Run batch effects potentially compromise the usefulness of genomic signatures for ovarian cancer, by Keith A. Baggerly, Shannon Neeley, and Kevin R. Coombes.

Here is a list of the available material. The main manuscript and supplementary reports are in PDF format. The source code, intermediate results, and public data sources are in zip files, starting from a common directory.

Our analysis source code relies on a number of software programs and auxiliary packages; we provide scripts, not stand-alone executables. Detailed descriptions of the packages (with version numbers) are listed in the methods section of the main manuscript. The pieces of software required to execute the source code can be obtained from the following locations:

This page was produced on: Wed Dec 5 14:54:19 2007 GMT. Our intention is to avoid changing the files posted here, allowing the web site to serve as permanent documentation of our analysis. Any changes will be posted on a separate page designed for addenda, errata, corrigenda and other related latinisms.