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GeneClust JS is an interactive web-based implementation of the Gene Shaving algorithm.
A detailed user guide is available. It includes links to some sample data files.
The TLDR version is:
- Create a tab-separated values file containing a matrix of gene data: rows are “genes”, columns are “samples”. The first line (row) contains sample identifiers for each data column. The first column of each row is the “gene” symbol.
- Set the algorithm’s parameters. (The defaults are fine.)
- Click the “Run Geneclust” button.
- Display a cluster by clicking on the cluster number in the left column of the results table.