BreakFusion
| Overview | |
| Description | A computational pipeline for identifying gene fusions from RNA-seq data. |
| Development Information | |
| Language | Perl and C++ |
| Current version | 1.0 |
| License | GPL v3 |
| Status | active |
| Last updated | 01/05/2012 |
| News | Applied to TCGA AML and BRCA fusion identification |
| References | |
| Citation | Chen, K., Wallis, J.W., Kandoth, C., et al., BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data, Bioinformatics vol 28, p 1923 (2012). https://doi.org/10.1093/bioinformatics/bts272 |
| Help and Support | |
| Contact | Ken Chen |
A computational pipeline for identifying gene fusions from RNA-seq data
The BreakTrans package includes two parts, executable files and annotation data files for each specific cancer. To run it, users need to download the executable files and the annotation database.
Entire Package (6.5 Mb)
README
Annotation database (202 Mb)