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BreakFusion

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Overview
DescriptionA computational pipeline for identifying gene fusions from RNA-seq data.
Development Information
LanguagePerl and C++
Current version1.0
LicenseGPL v3
Statusactive
Last updated01/05/2012
NewsApplied to TCGA AML and BRCA fusion identification
References
Citation Chen, K., Wallis, J.W., Kandoth, C., et al., BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data, Bioinformatics vol 28, p 1923 (2012). https://doi.org/10.1093/bioinformatics/bts272 
Help and Support
Contact Ken Chen 

BreakFusion

A computational pipeline for identifying gene fusions from RNA-seq data

Download

The BreakTrans package includes two parts, executable files and annotation data files for each specific cancer. To run it, users need to download the executable files and the annotation database.

Entire Package (6.5 Mb)

README

Annotation database (202 Mb)