Featured Bioinformatics Tools and Resources

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  geneSmash is a mash-up of various sources of information about human genes including the NCBI Entrez gene FTP site, UCSC Genome Browser, miRBase and human gene expression array annotation extracted from Manufacturers' websites. Use geneSmash

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  OOMPA is an object-oriented microarray and proteomics analysis library implemented in R using S4 classes and compatible with BioConductor.

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  Next-Generation (Clustered) Heat Maps is a zoomable (clustered) heat maps with links to statistical information, databases, and other related analyses.

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  SpliceSeq provides a quick, easy method of investigating alternative mRNA splicing in next generation mRNA sequence data.

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  TCGA Batch Effects Tool V2 provides graphical and statistical analysis of TCGA data sets that identifies and corrects for systematic bias such as trend and batch effects.