| Lecture | Title | Printable (B/W) | Auxiliary FIles |
|---|---|---|---|
| Lecture 0, 28 August 2007 | Administration, Syllabus, etc. | PDF file | |
| Lecture 1, 28 August 2007 | The Structure of Affymetrix Data | PDF file | |
| Lecture 2, 30 August 2007 | The Basics of dChip | PDF file | |
| Lecture 3, 4 September 2007 | Gene Annotations: Linking Numbers to Biology | PDF file | |
| 6 September 2007 | Live dChip Demo | NA | |
| Lecture 4, 11 September 2007 | Cell Lines, Microarrays, Drugs and Documentation | PDF file | |
| Lecture 5, 13 September 2007 | An Introduction to R | PDF file | |
| Lecture 6, 18 September 2007 | More on R and Affymetrix Arrays | PDF file | sample.Rnw, sample.pdf, affyExample.pdf, |
| Lecture 7, 20 September 2007 | Affymetrix, R, and BioConductor | PDF file | ma07.Rnw (source file) |
| Lecture 8, 25 September 2007 | Normalization and Affymetrix | PDF file | |
| Lecture 9, 27 September 2007 | Normalization, Affy, and R | PDF file | |
| Lecture 10, 2 October 2007 | Exploring Bioconductor | PDF file | ma10.Rnw (source file) |
| Lecture 11, 4 October 2007 | Differential Expression | PDF file | |
| Lecture 12, 9 October 2007 | Rank-based tests of differential expression | PDF file | ma12.Rnw (source file) |
| Lecture 13, 11 October 2007 | Differential Expression, Borrowing, and Modelling | PDF file | |
| Lecture 14, 16 October 2007 | Reporting Differential Expression | PDF file | |
| 18 October 2007 | Ovarian Cancer Improv | NA | |
| Lecture 16, 23 October 2007 | Clustering Microarray Data | PDF file | |
| Lecture 17, 25 October 2007 | Applied Clustering | PDF file | |
| Lecture 18, 30 October 2007 | Classification with Microarrays I | PDF file | |
| Lecture 19, 1 November 2007 | Classification with Microarrays II | PDF file | |
| Lecture 20, 6 November 2007 | Genome Browsing | PDF file | ma20.Rnw (source file) Agilent44K_1.0.zip (annotation package) |
| Lecture 21, 8 November 2007 | Comparing Microarray Analysis Methods | PDF file | |
| Lecture 22, 13 November 2007 | Quantifying Glass Microarrays | PDF file | |
| Lecture 23, 15 November 2007 | R and Glass Microarrays | PDF file | |
| Lecture 24, 20 November 2007 | Design, Microarrays, and Proteomics | PDF file | |
| Lecture 25, 27 November 2007 | Linear Models for Two-color Microarrays | PDF file | |
| Lecture 26, 29 November 2007 | Time Series | PDF file | |
| Lecture 27, 4 December 2007 | Meta-analysis of CLL | PDF file | |
| Lecture 28, 6 December 2007 | Pooling data across microarray experiments |