| Lecture | Title | Printable (B/W) |
|---|---|---|
| Lecture 0, 29 August 2006 | Administration, Syllabus, etc. | PDF file |
| Lecture 1, 29 August 2006 | The Structure of Affymetrix Data | PDF file |
| Lecture 2, 31 August 2006 | The Basics of dChip | PDF file |
| Lecture 3, 5 September 2006 | Gene Annotations: Linking Numbers to Biology | PDF file |
| 7 September 2006 | Live dChip Demo | NA |
| Lecture 4, 12 September 2006 | Introduction to R | PDF file |
| Lecture 5, 14 September 2006 | R, Objects, and Affymetrix Arrays | PDF file |
| Lecture 6, 19 September 2006 | Affymetrix, R, and BioConductor | PDF file |
| Lecture 7, 21 September 2006 | Normalization and Affymetrix | PDF file |
| Lecture 8, 26 September 2006 | Normalization, Affy, and R | PDF file |
| Lecture 9, 28 September 2006 | Exploring Bioconductor | PDF file |
| Lecture 10, 3 October 2006 | Differential Expression | PDF file |
| Lecture 11, 5 October 2006 | Rank-based tests of differential expression | PDF file |
| Lecture 12, 10 October 2006 | Differential Expression, Borrowing, and Modeling | PDF file |
| Lecture 13, 12 October 2006 | Reporting Differential Expression | PDF file |
| Lecture 14, 17 October 2005 | Genome Browsing | PDF file |
| Lecture 15, 19 October 2006 | Comparing Microarray Analysis Methods | PDF file |
| Lecture 16, 24 October 2006 | Quantifying Glass Microarrays | PDF file |
| Lecture 17, 26 October 2006 | R and Glass Microarrays | PDF file |
| Lecture 18, 31 October 2005 | A Two-color Case Study | PDF file |
| Lecture 19 Extra, 2 November 2006 | Notes on Homework 4 | PDF file |
| Lecture 19, 2 November 2006 | Linear Models for Two-color Microarrays | PDF file |
| Lecture 20, 7 November 2006 | Clustering Microarray Data | PDF file |
| Lecture 21, 9 November 2006 | Applied Clustering | PDF file |
| Lecture 22, 14 November 2006 | Classification with Microarrays I | PDF file |
| Lecture 23, 16 November 2006 | Classification with Microarrays II | PDF file |
| Lecture 24, 21 November 2005 | Design, Microarrays, and Proteomics | PDF file |
| Lecture 25, 28 November 2006 | Meta-analysis of CLL | PDF file |
| Lecture 26, 30 November 2006 | Time Series | PDF file |
| Lecture 27, 5 December 2006 | Pooling data across microarray experiments |