Analysis of Microarray Data: Lecture Notes

GS01 0163, Fall 2005

Lecture Title Printable (B/W)
Lecture 0, 30 August 2005 Administration, Syllabus, etc. PDF file
Lecture 1, 30 August 2005 The Structure of Affymetrix Data PDF file
Lecture 2, 1/6 September 2005 The Basics of dChip PDF file
Lecture 3, 8 September 2005 Gene Annotations: Linking Numbers to Biology PDF file
Lecture 4, 13 September 2005 Introduction to R PDF file
Lecture 5, 15 September 2005 BioConductor and Affymetrix Arrays PDF file
Lecture 6, 20 September 2005 Affymetrix, R, and BioConductor PDF file
Lecture 7, 27 September 2005 Normalization and Affymetrix PDF file
Lecture 8, 29 September 2005 Normalization, Affy, R, and Glass PDF file
Lecture 9, 4 October 2005 Differential Expression PDF file
Lecture 10, 6 October 2005 Rank-based tests of differential expression PDF file
Lecture 11, 11 October 2005 Differential expression and modelling PDF file
Lecture 12, 13 October 2005 Differential expression and borrowing PDF file
Lecture 13, 18 October 2005 Microarray in R, Start to Finish PDF file
Lecture 14, 20 October 2005 Comparing Analysis Methods PDF file
Lecture 15, 25 October 2005 Guest Lecturer: Li Zhang
Modeling sequence dependence of microarray probe signals
 
Lecture 16, 27 October 2005 Guest Lecturer: Jeff Morris
Pooling data across microarray experiments
 
Lecture 17, 1 November 2005 Quantifying Glass Microarrays PDF file
Lecture 18, 3 November 2005 R and Glass Microarrays PDF file
Lecture 19, 8 November 2005 A Two-color Case Study PDF file
Lecture 20, 10 November 2005 A Two-color Case Study (continued) PDF file
Lecture 21, 15 November 2005 Clustering Microarray Data PDF file
Lecture 22, 17 November 2005 Applied Clustering PDF file
Lecture 23, 22 November 2005 Design, Microarrays, and Proteomics PDF file
Lecture 24, 29 November 2005 Classification with Microarrays I PDF file
Lecture 25, 1 December 2005 Classification with Microarrays II PDF file
Lecture 26, 6 December 2005 Meta-analysis of CLL PDF file
Lecture 27, 8 December 2005 Time Series and Open Questions PDF file