| Lecture | Title | Printable (B/W) |
|---|---|---|
| Lecture 0, 30 August 2005 | Administration, Syllabus, etc. | PDF file |
| Lecture 1, 30 August 2005 | The Structure of Affymetrix Data | PDF file |
| Lecture 2, 1/6 September 2005 | The Basics of dChip | PDF file |
| Lecture 3, 8 September 2005 | Gene Annotations: Linking Numbers to Biology | PDF file |
| Lecture 4, 13 September 2005 | Introduction to R | PDF file |
| Lecture 5, 15 September 2005 | BioConductor and Affymetrix Arrays | PDF file |
| Lecture 6, 20 September 2005 | Affymetrix, R, and BioConductor | PDF file |
| Lecture 7, 27 September 2005 | Normalization and Affymetrix | PDF file |
| Lecture 8, 29 September 2005 | Normalization, Affy, R, and Glass | PDF file |
| Lecture 9, 4 October 2005 | Differential Expression | PDF file |
| Lecture 10, 6 October 2005 | Rank-based tests of differential expression | PDF file |
| Lecture 11, 11 October 2005 | Differential expression and modelling | PDF file |
| Lecture 12, 13 October 2005 | Differential expression and borrowing | PDF file |
| Lecture 13, 18 October 2005 | Microarray in R, Start to Finish | PDF file |
| Lecture 14, 20 October 2005 | Comparing Analysis Methods | PDF file |
| Lecture 15, 25 October 2005 | Guest Lecturer: Li Zhang Modeling sequence dependence of microarray probe signals |
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| Lecture 16, 27 October 2005 | Guest Lecturer: Jeff Morris Pooling data across microarray experiments |
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| Lecture 17, 1 November 2005 | Quantifying Glass Microarrays | PDF file |
| Lecture 18, 3 November 2005 | R and Glass Microarrays | PDF file |
| Lecture 19, 8 November 2005 | A Two-color Case Study | PDF file |
| Lecture 20, 10 November 2005 | A Two-color Case Study (continued) | PDF file |
| Lecture 21, 15 November 2005 | Clustering Microarray Data | PDF file |
| Lecture 22, 17 November 2005 | Applied Clustering | PDF file |
| Lecture 23, 22 November 2005 | Design, Microarrays, and Proteomics | PDF file |
| Lecture 24, 29 November 2005 | Classification with Microarrays I | PDF file |
| Lecture 25, 1 December 2005 | Classification with Microarrays II | PDF file |
| Lecture 26, 6 December 2005 | Meta-analysis of CLL | PDF file |
| Lecture 27, 8 December 2005 | Time Series and Open Questions | PDF file |